Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47468 * 2 1 4 4 C 1.50704 * 109.47129 * 120.00313 * 2 1 3 5 5 H 1.08000 * 120.00123 * 119.99658 * 4 2 1 6 6 C 1.37878 * 119.99757 * 299.99944 * 4 2 1 7 7 N 1.31516 * 119.99827 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99860 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47098 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47097 * 119.99869 * 8 6 4 11 11 H 1.48508 * 109.46814 * 240.00070 * 8 6 4 12 12 C 1.53000 * 109.47075 * 240.00318 * 2 1 3 13 13 H 1.09002 * 109.73611 * 300.40626 * 12 2 1 14 14 C 1.53336 * 109.60439 * 60.81370 * 12 2 1 15 15 C 1.53073 * 108.42581 * 187.28907 * 14 12 2 16 16 C 1.50175 * 109.89171 * 311.09931 * 15 14 12 17 17 O 1.21277 * 118.25217 * 197.55951 * 16 15 14 18 18 N 1.32957 * 123.39195 * 17.52991 * 16 15 14 19 19 C 1.45758 * 124.41276 * 357.87592 * 18 16 15 20 20 H 1.09001 * 109.46972 * 299.99980 * 1 2 3 21 21 H 1.09005 * 109.47031 * 59.99598 * 1 2 3 22 22 H 1.08996 * 109.47468 * 179.97438 * 1 2 3 23 23 H 0.97005 * 119.99435 * 180.02562 * 7 6 4 24 24 H 1.08998 * 109.67812 * 307.01947 * 14 12 2 25 25 H 1.08998 * 109.67685 * 67.52030 * 14 12 2 26 26 H 1.08999 * 109.40436 * 71.22797 * 15 14 12 27 27 H 1.09001 * 109.40329 * 191.05831 * 15 14 12 28 28 H 0.97005 * 117.64621 * 177.87455 * 18 16 15 29 29 H 1.09002 * 109.30363 * 258.75736 * 19 18 16 30 30 H 1.08998 * 109.30258 * 139.17301 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.1473 -2.2864 3.6037 10 1 3.1472 -0.1859 4.8160 11 1 1.1676 -1.5868 4.8164 12 6 2.0399 -0.7212 -1.2493 13 1 1.6731 -1.7476 -1.2573 14 6 1.5473 0.0111 -2.5032 15 6 1.9148 -0.8283 -3.7294 16 6 3.3581 -1.2365 -3.6553 17 8 3.8995 -1.6184 -4.6711 18 7 4.0722 -1.2002 -2.5344 19 6 3.5692 -0.7230 -1.2523 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7087 1.1611 3.4844 24 1 0.4655 0.1354 -2.4545 25 1 2.0262 0.9880 -2.5697 26 1 1.2876 -1.7193 -3.7595 27 1 1.7520 -0.2403 -4.6327 28 1 4.9896 -1.5128 -2.5748 29 1 3.9310 0.2903 -1.0778 30 1 3.9302 -1.3762 -0.4579 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231054.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = -61.759391 kcal Electronic energy + Delta-G solvation = -12833.545995 eV Core-core repulsion = 10627.685416 eV Total energy + Delta-G solvation = -2205.860578 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.87212 -36.80826 -33.98937 -32.52090 -30.71770 -27.71681 -25.39957 -23.58451 -22.47772 -19.94744 -18.43703 -16.72848 -16.44363 -15.41458 -14.99947 -14.60369 -13.74443 -13.58106 -13.13270 -12.90073 -12.48409 -11.97923 -11.28488 -11.17710 -10.96393 -10.80020 -10.52274 -10.41409 -10.19636 -9.89632 -9.39425 -9.24024 -8.76122 -8.62432 -8.40069 -6.05628 -4.12863 2.99610 3.24435 3.33596 3.35908 3.75531 4.37093 5.01321 5.24867 5.29660 5.31939 5.46684 5.84384 5.93073 6.10866 6.22094 6.27975 6.64123 6.65332 6.74643 6.93879 7.09685 7.10396 7.29170 7.64901 7.75191 7.89399 8.07541 8.35610 8.56590 8.90552 9.53028 10.99952 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055100 B = 0.009731 C = 0.008604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.047188 B = 2876.608140 C = 3253.528291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 H 0.029 0.971 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.888 3.112 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.091 4.091 13 H 0.065 0.935 14 C -0.124 4.124 15 C -0.135 4.135 16 C 0.520 3.480 17 O -0.583 6.583 18 N -0.716 5.716 19 C 0.118 3.882 20 H 0.082 0.918 21 H 0.011 0.989 22 H 0.025 0.975 23 H 0.259 0.741 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.391 0.609 29 H 0.065 0.935 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -1.340 -5.645 5.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.033 3.967 3 H 0.047 0.953 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.716 3.284 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.110 4.110 13 H 0.084 0.916 14 C -0.161 4.161 15 C -0.175 4.175 16 C 0.307 3.693 17 O -0.465 6.465 18 N -0.365 5.365 19 C -0.005 4.005 20 H 0.101 0.899 21 H 0.030 0.970 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.225 0.775 29 H 0.083 0.917 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.337 -1.329 -5.989 6.279 hybrid contribution 0.612 -0.555 1.093 1.370 sum 1.950 -1.884 -4.896 5.596 Atomic orbital electron populations 1.21849 0.98512 0.99013 1.00220 1.18634 0.92738 0.95583 0.89722 0.95300 1.21223 1.31257 1.12323 0.90547 0.92523 1.24959 0.95032 0.94934 0.98992 1.69895 1.36634 1.22905 1.23246 0.86602 0.78680 0.79721 0.83373 1.19824 1.21086 1.21093 1.21563 0.92621 1.00345 0.96432 0.91618 1.21865 1.02472 0.98517 0.93289 1.21657 0.92655 1.02196 1.00952 1.20141 0.89679 0.76858 0.82621 1.90693 1.72020 1.49814 1.33969 1.45626 1.15978 1.64557 1.10332 1.21601 0.96288 0.99952 0.82671 0.89949 0.96961 0.95625 0.93052 0.90316 0.91835 0.88751 0.89074 0.77485 0.91714 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.65 37.16 0.32 -2.75 16 2 C 0.05 1.16 1.88 -91.77 -0.17 0.99 16 3 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.52 -12.86 7.93 -34.44 -0.27 -13.14 16 5 H 0.06 1.39 6.75 -52.49 -0.35 1.03 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 8 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.09 -1.65 1.80 -90.49 -0.16 -1.82 16 13 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 14 C -0.12 -1.95 5.16 -26.52 -0.14 -2.09 16 15 C -0.13 -1.99 6.03 -28.10 -0.17 -2.15 16 16 C 0.52 8.89 7.71 -12.05 -0.09 8.80 16 17 O -0.58 -11.76 17.78 5.56 0.10 -11.66 16 18 N -0.72 -11.26 5.42 -61.48 -0.33 -11.60 16 19 C 0.12 1.98 6.05 -4.48 -0.03 1.95 16 20 H 0.08 2.07 6.07 -51.93 -0.32 1.75 16 21 H 0.01 0.23 6.31 -51.93 -0.33 -0.10 16 22 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 24 H 0.08 1.21 6.14 -51.93 -0.32 0.89 16 25 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.39 5.53 8.79 -40.82 -0.36 5.17 16 29 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 30 H 0.08 1.43 6.96 -51.93 -0.36 1.07 16 LS Contribution 242.16 15.07 3.65 3.65 Total: -1.00 -28.28 242.16 -5.91 -34.19 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.13 Total: 2.37 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.81 Total: -8.67 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.29 Total: -35.13 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.10 Total: -11.66 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.28 -5.91 -34.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231054.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.565 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds