Wall clock time and date at job start Mon Mar 30 2020 01:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00084 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.47200 * 59.99994 * 8 6 4 10 10 H 1.48498 * 109.46671 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47156 * 300.00008 * 8 6 4 12 12 C 1.53001 * 109.47124 * 240.00284 * 2 1 3 13 13 H 1.09002 * 110.43558 * 180.69776 * 12 2 1 14 14 C 1.54627 * 110.49065 * 58.15388 * 12 2 1 15 15 C 1.54476 * 101.77077 * 216.52557 * 14 12 2 16 16 N 1.46769 * 105.46967 * 25.41526 * 15 14 12 17 17 C 1.34654 * 111.33888 * 342.86902 * 16 15 14 18 18 O 1.21281 * 125.07396 * 180.51833 * 17 16 15 19 19 H 1.08995 * 109.47131 * 299.99850 * 1 2 3 20 20 H 1.08998 * 109.47544 * 60.00297 * 1 2 3 21 21 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47156 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47223 * 299.99899 * 3 2 1 24 24 H 1.08995 * 109.47095 * 60.00128 * 3 2 1 25 25 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 26 26 H 1.09006 * 110.96957 * 334.64636 * 14 12 2 27 27 H 1.09004 * 110.96793 * 98.36164 * 14 12 2 28 28 H 1.08997 * 110.24969 * 144.41441 * 15 14 12 29 29 H 1.09004 * 110.24455 * 266.33112 * 15 14 12 30 30 H 0.96999 * 124.34530 * 162.98777 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3157 -1.1244 4.0079 9 1 3.8007 -1.1309 4.0103 10 1 1.8223 -0.4232 5.2204 11 1 1.8147 -2.5223 4.0055 12 6 2.0400 -0.7212 -1.2493 13 1 3.1298 -0.7411 -1.2590 14 6 1.4999 -0.0381 -2.5270 15 6 1.2600 -1.2498 -3.4547 16 7 1.0473 -2.3927 -2.5589 17 6 1.4841 -2.1268 -1.3132 18 8 1.4381 -2.8987 -0.3789 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 3.1300 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 0.7088 1.1613 3.4844 26 1 0.5672 0.4881 -2.3235 27 1 2.2422 0.6380 -2.9514 28 1 0.3764 -1.0840 -4.0710 29 1 2.1325 -1.4204 -4.0854 30 1 0.6452 -3.2329 -2.8297 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:04 Heat of formation + Delta-G solvation = -40.328603 kcal Electronic energy + Delta-G solvation = -13355.992533 eV Core-core repulsion = 11151.061263 eV Total energy + Delta-G solvation = -2204.931270 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.77442 -35.75183 -35.05155 -31.53929 -28.96946 -26.48073 -25.64147 -24.99937 -21.61210 -20.20975 -17.93541 -16.53865 -15.98369 -15.59848 -14.53075 -13.92050 -13.29313 -13.13804 -12.85191 -12.43717 -11.81967 -11.64478 -11.39249 -10.92317 -10.75261 -10.55349 -10.36740 -10.21681 -9.92015 -9.58946 -9.16092 -8.90056 -8.52452 -8.33031 -8.13637 -5.78973 -3.83297 3.46029 3.48352 3.53301 3.56335 3.97808 4.60615 5.08458 5.27133 5.33347 5.49002 5.68831 5.92166 6.10849 6.35236 6.55151 6.60263 6.83152 7.00229 7.08992 7.17499 7.42555 7.50278 7.64562 7.69140 7.94304 8.14867 8.33972 8.63251 9.10878 9.19179 9.79628 11.23370 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047125 B = 0.013823 C = 0.011841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.021958 B = 2025.184894 C = 2364.133078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 C -0.130 4.130 4 C -0.482 4.482 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.890 3.110 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.278 1.278 12 C -0.107 4.107 13 H 0.090 0.910 14 C -0.137 4.137 15 C 0.107 3.893 16 N -0.753 5.753 17 C 0.528 3.472 18 O -0.509 6.509 19 H 0.086 0.914 20 H 0.009 0.991 21 H 0.024 0.976 22 H 0.025 0.975 23 H 0.010 0.990 24 H 0.086 0.914 25 H 0.256 0.744 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 -0.371 -10.848 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.082 3.918 3 C -0.188 4.188 4 C -0.521 4.521 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.538 5.538 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.204 1.204 12 C -0.128 4.128 13 H 0.108 0.892 14 C -0.175 4.175 15 C -0.018 4.018 16 N -0.411 5.411 17 C 0.315 3.685 18 O -0.382 6.382 19 H 0.104 0.896 20 H 0.028 0.972 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.029 0.971 24 H 0.105 0.895 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.284 -0.566 -10.126 10.146 hybrid contribution 0.097 -0.867 0.567 1.041 sum 0.381 -1.433 -9.559 9.673 Atomic orbital electron populations 1.21933 0.98118 0.99011 1.00144 1.17959 0.92342 0.91957 0.89499 1.21825 0.98316 0.98197 1.00423 1.21146 1.30222 1.10988 0.89705 0.91963 1.24858 0.95388 0.95039 0.98716 1.69798 1.37807 1.23348 1.22816 0.86682 0.78962 0.80060 0.82417 1.20573 1.21679 1.20389 1.22129 1.00736 0.92470 0.97484 0.89179 1.22821 1.02903 0.96428 0.95332 1.21919 1.00361 0.86794 0.92770 1.46446 1.65632 1.17249 1.11793 1.21114 0.76360 0.89891 0.81162 1.90714 1.55243 1.53684 1.38539 0.89585 0.97205 0.95686 0.95602 0.97134 0.89549 0.93386 0.89532 0.90399 0.91559 0.92296 0.76628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 7.71 37.16 0.29 -3.01 16 2 C 0.08 2.02 0.31 -155.66 -0.05 1.97 16 3 C -0.13 -3.01 8.05 37.16 0.30 -2.71 16 4 C -0.48 -13.59 6.87 -34.44 -0.24 -13.83 16 5 H 0.06 1.84 6.76 -52.49 -0.35 1.49 16 6 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 7 N -0.90 -25.52 9.35 55.43 0.52 -25.00 16 8 Si 0.89 22.65 29.54 -169.99 -5.02 17.63 16 9 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 12 C -0.11 -2.18 2.27 -90.63 -0.21 -2.39 16 13 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 14 C -0.14 -2.13 5.46 -25.10 -0.14 -2.26 16 15 C 0.11 1.38 7.78 -3.12 -0.02 1.35 16 16 N -0.75 -12.15 6.25 -59.14 -0.37 -12.52 16 17 C 0.53 11.31 6.53 -10.75 -0.07 11.24 16 18 O -0.51 -13.26 15.77 5.56 0.09 -13.18 16 19 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 20 H 0.01 0.20 6.04 -51.93 -0.31 -0.12 16 21 H 0.02 0.63 7.09 -51.92 -0.37 0.26 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.01 0.20 7.28 -51.93 -0.38 -0.18 16 24 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.09 1.41 5.66 -51.93 -0.29 1.11 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.40 5.51 8.96 -40.82 -0.37 5.14 16 LS Contribution 235.30 15.07 3.55 3.55 Total: -1.00 -31.44 235.30 -5.42 -36.86 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.95 Total: 0.71 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -0.23 Total: -8.05 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.15 Total: -37.51 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.44 -5.42 -36.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.472 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds