Wall clock time and date at job start Mon Mar 30 2020 01:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00084 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.47200 * 59.99994 * 8 6 4 10 10 H 1.48498 * 109.46671 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47156 * 300.00008 * 8 6 4 12 12 C 1.53001 * 109.47124 * 240.00284 * 2 1 3 13 13 H 1.09002 * 110.43558 * 180.69776 * 12 2 1 14 14 C 1.54627 * 110.49065 * 58.15388 * 12 2 1 15 15 C 1.54476 * 101.77077 * 216.52557 * 14 12 2 16 16 N 1.46769 * 105.46967 * 25.41526 * 15 14 12 17 17 C 1.34654 * 111.33888 * 342.86902 * 16 15 14 18 18 O 1.21281 * 125.07396 * 180.51833 * 17 16 15 19 19 H 1.08995 * 109.47131 * 299.99850 * 1 2 3 20 20 H 1.08998 * 109.47544 * 60.00297 * 1 2 3 21 21 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47156 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47223 * 299.99899 * 3 2 1 24 24 H 1.08995 * 109.47095 * 60.00128 * 3 2 1 25 25 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 26 26 H 1.09006 * 110.96957 * 334.64636 * 14 12 2 27 27 H 1.09004 * 110.96793 * 98.36164 * 14 12 2 28 28 H 1.08997 * 110.24969 * 144.41441 * 15 14 12 29 29 H 1.09004 * 110.24455 * 266.33112 * 15 14 12 30 30 H 0.96999 * 124.34530 * 162.98777 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3157 -1.1244 4.0079 9 1 3.8007 -1.1309 4.0103 10 1 1.8223 -0.4232 5.2204 11 1 1.8147 -2.5223 4.0055 12 6 2.0400 -0.7212 -1.2493 13 1 3.1298 -0.7411 -1.2590 14 6 1.4999 -0.0381 -2.5270 15 6 1.2600 -1.2498 -3.4547 16 7 1.0473 -2.3927 -2.5589 17 6 1.4841 -2.1268 -1.3132 18 8 1.4381 -2.8987 -0.3789 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 3.1300 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 0.7088 1.1613 3.4844 26 1 0.5672 0.4881 -2.3235 27 1 2.2422 0.6380 -2.9514 28 1 0.3764 -1.0840 -4.0710 29 1 2.1325 -1.4204 -4.0854 30 1 0.6452 -3.2329 -2.8297 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:04 Heat of formation + Delta-G solvation = -63.234521 kcal Electronic energy + Delta-G solvation = -13356.985808 eV Core-core repulsion = 11151.061263 eV Total energy + Delta-G solvation = -2205.924545 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31328 -37.52308 -36.70754 -33.51040 -30.46796 -27.99612 -27.56009 -27.04394 -23.03371 -21.76403 -19.71698 -18.01390 -17.90282 -17.19048 -16.52138 -15.49753 -15.08643 -14.59861 -14.42694 -14.23887 -13.39705 -13.25797 -13.22477 -12.80484 -12.58311 -12.46679 -12.28119 -11.97113 -11.75110 -11.50199 -10.95157 -10.75939 -10.32505 -10.15073 -9.82653 -7.93305 -6.02195 1.38078 1.40935 1.48689 1.90490 2.50104 2.69387 3.29540 3.82017 3.91848 4.19202 4.49105 4.71355 4.74255 4.88991 4.94822 5.07589 5.13724 5.25518 5.29002 5.50276 5.50996 5.72775 5.79461 6.11754 6.20620 6.26628 6.37524 6.58788 7.00812 7.58025 7.63579 9.05368 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047125 B = 0.013823 C = 0.011841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.021958 B = 2025.184894 C = 2364.133078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.073 3.927 3 C -0.119 4.119 4 C -0.495 4.495 5 H 0.037 0.963 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.933 3.067 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.292 1.292 12 C -0.112 4.112 13 H 0.087 0.913 14 C -0.129 4.129 15 C 0.107 3.893 16 N -0.737 5.737 17 C 0.516 3.484 18 O -0.572 6.572 19 H 0.055 0.945 20 H 0.044 0.956 21 H 0.001 0.999 22 H 0.025 0.975 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.255 0.745 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 0.312 -13.289 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 C -0.177 4.177 4 C -0.534 4.534 5 H 0.055 0.945 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.761 3.239 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.219 1.219 12 C -0.134 4.134 13 H 0.105 0.895 14 C -0.166 4.166 15 C -0.017 4.017 16 N -0.393 5.393 17 C 0.304 3.696 18 O -0.450 6.450 19 H 0.074 0.926 20 H 0.063 0.937 21 H 0.020 0.980 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.363 0.137 -12.628 12.634 hybrid contribution 0.064 -1.099 1.258 1.672 sum 0.427 -0.962 -11.370 11.419 Atomic orbital electron populations 1.21747 0.98384 0.97401 1.00314 1.17987 0.92102 0.92724 0.89971 1.21647 0.98198 0.97301 1.00577 1.21392 1.29857 1.10314 0.91840 0.94499 1.25409 0.96032 0.95869 1.00727 1.69906 1.38237 1.23826 1.22946 0.86016 0.78873 0.78450 0.80605 1.19870 1.20586 1.21855 1.22033 1.00660 0.92374 0.98310 0.89465 1.22839 1.03165 0.97629 0.93013 1.22243 1.03504 0.83963 0.91950 1.46371 1.63635 1.18766 1.10557 1.21390 0.76334 0.89930 0.81994 1.90674 1.58005 1.55293 1.41055 0.92591 0.93742 0.98018 0.95609 0.93630 0.92608 0.93558 0.90000 0.87299 0.87988 0.89122 0.75221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 7.71 71.98 0.55 -5.32 16 2 C 0.07 3.51 0.31 -52.93 -0.02 3.49 16 3 C -0.12 -5.37 8.05 71.98 0.58 -4.79 16 4 C -0.50 -28.56 6.87 25.60 0.18 -28.38 16 5 H 0.04 2.27 6.76 -2.91 -0.02 2.25 16 6 C 0.02 0.97 5.15 84.66 0.44 1.41 16 7 N -0.91 -52.48 9.35 21.45 0.20 -52.28 16 8 Si 0.93 47.39 29.54 68.60 2.03 49.42 16 9 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 11 H -0.29 -15.38 7.11 99.48 0.71 -14.68 16 12 C -0.11 -4.41 2.27 -10.80 -0.02 -4.43 16 13 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 14 C -0.13 -3.42 5.46 31.65 0.17 -3.25 16 15 C 0.11 2.20 7.78 86.83 0.68 2.87 16 16 N -0.74 -21.66 6.25 -459.48 -2.87 -24.53 16 17 C 0.52 21.76 6.53 87.86 0.57 22.33 16 18 O -0.57 -30.64 15.77 -3.03 -0.05 -30.69 16 19 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 20 H 0.04 1.79 6.04 -2.39 -0.01 1.78 16 21 H 0.00 0.03 7.09 -2.38 -0.02 0.02 16 22 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 1.68 7.28 -2.39 -0.02 1.67 16 24 H 0.06 2.86 6.07 -2.39 -0.01 2.85 16 25 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 26 H 0.08 2.27 5.66 -2.38 -0.01 2.25 16 27 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.41 10.27 8.96 -92.71 -0.83 9.44 16 Total: -1.00 -70.89 235.30 2.75 -68.14 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.31 Total: 6.02 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 3.13 Total: -16.07 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -2.67 Total: -76.82 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.05 Total: -30.69 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -70.89 2.75 -68.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.906 kcal (2) G-P(sol) polarization free energy of solvation -70.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds