Wall clock time and date at job start Mon Mar 30 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47095 * 2 1 4 4 C 1.50696 * 109.46989 * 239.99593 * 2 1 3 5 5 H 1.07996 * 120.00312 * 236.98176 * 4 2 1 6 6 C 1.37880 * 119.99943 * 56.98832 * 4 2 1 7 7 N 1.31520 * 119.99871 * 6.84340 * 6 4 2 8 8 Si 1.86791 * 120.00041 * 186.84453 * 6 4 2 9 9 H 1.48499 * 109.47570 * 84.98598 * 8 6 4 10 10 H 1.48499 * 109.47134 * 204.98939 * 8 6 4 11 11 H 1.48501 * 109.47138 * 324.98576 * 8 6 4 12 12 C 1.53004 * 109.46916 * 119.99953 * 2 1 3 13 13 H 1.08996 * 110.43744 * 177.46053 * 12 2 1 14 14 C 1.54632 * 110.48736 * 299.99825 * 12 2 1 15 15 C 1.54479 * 101.76586 * 143.47398 * 14 12 2 16 16 N 1.46768 * 105.47533 * 334.58955 * 15 14 12 17 17 C 1.34419 * 111.29863 * 17.01117 * 16 15 14 18 18 O 1.21288 * 124.94160 * 179.61947 * 17 16 15 19 19 H 1.09009 * 109.47288 * 305.12527 * 1 2 3 20 20 H 1.09002 * 109.47488 * 65.12611 * 1 2 3 21 21 H 1.09004 * 109.47755 * 185.12790 * 1 2 3 22 22 H 1.09003 * 109.46818 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47000 * 299.99690 * 3 2 1 24 24 H 1.09005 * 109.46997 * 60.00260 * 3 2 1 25 25 H 0.97000 * 119.99568 * 180.02562 * 7 6 4 26 26 H 1.08994 * 110.97123 * 261.59694 * 14 12 2 27 27 H 1.09011 * 110.96695 * 25.32394 * 14 12 2 28 28 H 1.09008 * 110.24259 * 93.58624 * 15 14 12 29 29 H 1.08993 * 110.25124 * 215.58388 * 15 14 12 30 30 H 0.96996 * 124.34684 * 197.01434 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6927 -1.5593 -1.1321 6 6 1.6487 -0.2768 -2.4817 7 7 0.9562 0.8340 -2.6090 8 14 2.1126 -1.2670 -3.9962 9 1 1.1069 -2.3375 -4.2149 10 1 2.1486 -0.3721 -5.1807 11 1 3.4511 -1.8785 -3.7969 12 6 2.0399 -0.7213 1.2493 13 1 3.1288 -0.7698 1.2429 14 6 1.5375 -0.0107 2.5275 15 6 1.2801 -1.2058 3.4718 16 7 1.0239 -2.3521 2.5918 17 6 1.4457 -2.1096 1.3388 18 8 1.3618 -2.8902 0.4143 19 1 -0.3634 0.5913 0.8406 20 1 -0.3634 0.4323 -0.9323 21 1 -0.3635 -1.0235 0.0919 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9563 0.8901 25 1 0.6860 1.1389 -3.4894 26 1 2.3038 0.6495 2.9336 27 1 0.6162 0.5382 2.3321 28 1 2.1580 -1.3938 4.0902 29 1 0.4107 -1.0103 4.0994 30 1 0.6042 -3.1785 2.8778 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248803.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:06 Heat of formation + Delta-G solvation = -40.726749 kcal Electronic energy + Delta-G solvation = -13358.280466 eV Core-core repulsion = 11153.331931 eV Total energy + Delta-G solvation = -2204.948535 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.80050 -35.75009 -35.06221 -31.55435 -28.98643 -26.48114 -25.63986 -25.00846 -21.61654 -20.22135 -17.94352 -16.54854 -16.00665 -15.57778 -14.54750 -13.93562 -13.29010 -13.15063 -12.85827 -12.43179 -11.81050 -11.64541 -11.38725 -10.89047 -10.80430 -10.53563 -10.38183 -10.25012 -9.92118 -9.61035 -9.14093 -8.88033 -8.53949 -8.41487 -8.10024 -5.80434 -3.83893 3.45227 3.50106 3.53163 3.56281 3.97459 4.60461 5.07958 5.25952 5.32990 5.48301 5.68180 5.91689 6.10576 6.35376 6.54939 6.60494 6.81720 6.99459 7.09211 7.16557 7.41844 7.49374 7.64887 7.67924 7.93226 8.14706 8.32899 8.62476 9.10689 9.17067 9.78587 11.21815 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046842 B = 0.013924 C = 0.011857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.609551 B = 2010.449205 C = 2360.910905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 C -0.130 4.130 4 C -0.481 4.481 5 H 0.060 0.940 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.277 1.277 12 C -0.106 4.106 13 H 0.090 0.910 14 C -0.136 4.136 15 C 0.106 3.894 16 N -0.752 5.752 17 C 0.527 3.473 18 O -0.510 6.510 19 H 0.010 0.990 20 H 0.085 0.915 21 H 0.023 0.977 22 H 0.025 0.975 23 H 0.087 0.913 24 H 0.009 0.991 25 H 0.256 0.744 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -0.365 10.875 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.083 3.917 3 C -0.188 4.188 4 C -0.519 4.519 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.719 3.281 9 H -0.209 1.209 10 H -0.217 1.217 11 H -0.202 1.202 12 C -0.128 4.128 13 H 0.109 0.891 14 C -0.174 4.174 15 C -0.019 4.019 16 N -0.410 5.410 17 C 0.314 3.686 18 O -0.383 6.383 19 H 0.029 0.971 20 H 0.104 0.896 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.106 0.894 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.262 -0.566 10.161 10.180 hybrid contribution -0.018 -0.928 -0.549 1.078 sum 0.245 -1.494 9.612 9.730 Atomic orbital electron populations 1.21907 0.98149 0.98202 1.00979 1.17960 0.92294 0.92006 0.89490 1.21860 0.98337 0.98144 1.00423 1.21109 1.28009 1.13001 0.89761 0.92215 1.24845 0.95597 0.94829 0.98696 1.69818 1.39854 1.21077 1.22823 0.86634 0.78915 0.80064 0.82474 1.20855 1.21746 1.20194 1.22142 1.00710 0.92502 0.97450 0.89150 1.22799 1.02845 0.96510 0.95215 1.21936 1.00186 0.86757 0.93032 1.46394 1.64816 1.18322 1.11477 1.21057 0.76691 0.89634 0.81171 1.90715 1.55510 1.52349 1.39776 0.97126 0.89647 0.95772 0.95608 0.89418 0.97206 0.93397 0.90371 0.89656 0.92259 0.91533 0.76597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 7.74 37.16 0.29 -3.02 16 2 C 0.08 2.02 0.30 -155.66 -0.05 1.98 16 3 C -0.13 -3.01 8.05 37.16 0.30 -2.71 16 4 C -0.48 -13.53 6.81 -34.44 -0.23 -13.77 16 5 H 0.06 1.77 7.09 -52.49 -0.37 1.39 16 6 C 0.06 1.68 5.10 -17.82 -0.09 1.59 16 7 N -0.90 -25.44 9.39 55.43 0.52 -24.92 16 8 Si 0.89 22.73 29.54 -169.99 -5.02 17.71 16 9 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 C -0.11 -2.18 2.27 -90.63 -0.21 -2.39 16 13 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 14 C -0.14 -2.11 5.41 -25.10 -0.14 -2.24 16 15 C 0.11 1.37 7.78 -3.12 -0.02 1.34 16 16 N -0.75 -12.10 6.24 -59.20 -0.37 -12.47 16 17 C 0.53 11.28 6.40 -10.86 -0.07 11.21 16 18 O -0.51 -13.27 15.94 5.55 0.09 -13.18 16 19 H 0.01 0.22 6.32 -51.92 -0.33 -0.11 16 20 H 0.08 2.32 5.97 -51.93 -0.31 2.01 16 21 H 0.02 0.60 6.77 -51.93 -0.35 0.25 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 24 H 0.01 0.18 7.16 -51.93 -0.37 -0.19 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.38 5.76 -51.92 -0.30 1.08 16 28 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.40 5.49 8.96 -40.82 -0.37 5.13 16 LS Contribution 235.41 15.07 3.55 3.55 Total: -1.00 -31.42 235.41 -5.42 -36.84 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.96 Total: 0.47 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.22 Total: -8.00 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.15 Total: -37.39 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.42 -5.42 -36.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248803.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.885 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds