Wall clock time and date at job start Mon Mar 30 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47095 * 2 1 4 4 C 1.50696 * 109.46989 * 239.99593 * 2 1 3 5 5 H 1.07996 * 120.00312 * 236.98176 * 4 2 1 6 6 C 1.37880 * 119.99943 * 56.98832 * 4 2 1 7 7 N 1.31520 * 119.99871 * 6.84340 * 6 4 2 8 8 Si 1.86791 * 120.00041 * 186.84453 * 6 4 2 9 9 H 1.48499 * 109.47570 * 84.98598 * 8 6 4 10 10 H 1.48499 * 109.47134 * 204.98939 * 8 6 4 11 11 H 1.48501 * 109.47138 * 324.98576 * 8 6 4 12 12 C 1.53004 * 109.46916 * 119.99953 * 2 1 3 13 13 H 1.08996 * 110.43744 * 177.46053 * 12 2 1 14 14 C 1.54632 * 110.48736 * 299.99825 * 12 2 1 15 15 C 1.54479 * 101.76586 * 143.47398 * 14 12 2 16 16 N 1.46768 * 105.47533 * 334.58955 * 15 14 12 17 17 C 1.34419 * 111.29863 * 17.01117 * 16 15 14 18 18 O 1.21288 * 124.94160 * 179.61947 * 17 16 15 19 19 H 1.09009 * 109.47288 * 305.12527 * 1 2 3 20 20 H 1.09002 * 109.47488 * 65.12611 * 1 2 3 21 21 H 1.09004 * 109.47755 * 185.12790 * 1 2 3 22 22 H 1.09003 * 109.46818 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47000 * 299.99690 * 3 2 1 24 24 H 1.09005 * 109.46997 * 60.00260 * 3 2 1 25 25 H 0.97000 * 119.99568 * 180.02562 * 7 6 4 26 26 H 1.08994 * 110.97123 * 261.59694 * 14 12 2 27 27 H 1.09011 * 110.96695 * 25.32394 * 14 12 2 28 28 H 1.09008 * 110.24259 * 93.58624 * 15 14 12 29 29 H 1.08993 * 110.25124 * 215.58388 * 15 14 12 30 30 H 0.96996 * 124.34684 * 197.01434 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6927 -1.5593 -1.1321 6 6 1.6487 -0.2768 -2.4817 7 7 0.9562 0.8340 -2.6090 8 14 2.1126 -1.2670 -3.9962 9 1 1.1069 -2.3375 -4.2149 10 1 2.1486 -0.3721 -5.1807 11 1 3.4511 -1.8785 -3.7969 12 6 2.0399 -0.7213 1.2493 13 1 3.1288 -0.7698 1.2429 14 6 1.5375 -0.0107 2.5275 15 6 1.2801 -1.2058 3.4718 16 7 1.0239 -2.3521 2.5918 17 6 1.4457 -2.1096 1.3388 18 8 1.3618 -2.8902 0.4143 19 1 -0.3634 0.5913 0.8406 20 1 -0.3634 0.4323 -0.9323 21 1 -0.3635 -1.0235 0.0919 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9563 0.8901 25 1 0.6860 1.1389 -3.4894 26 1 2.3038 0.6495 2.9336 27 1 0.6162 0.5382 2.3321 28 1 2.1580 -1.3938 4.0902 29 1 0.4107 -1.0103 4.0994 30 1 0.6042 -3.1785 2.8778 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248803.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:06 Heat of formation + Delta-G solvation = -63.605702 kcal Electronic energy + Delta-G solvation = -13359.272571 eV Core-core repulsion = 11153.331931 eV Total energy + Delta-G solvation = -2205.940640 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.33577 -37.52176 -36.71460 -33.52432 -30.48393 -27.99512 -27.55700 -27.05449 -23.03717 -21.77118 -19.72525 -18.02056 -17.91246 -17.18470 -16.53703 -15.51787 -15.09092 -14.60188 -14.43238 -14.21882 -13.41078 -13.24067 -13.22805 -12.81106 -12.58431 -12.44760 -12.30724 -12.00289 -11.76388 -11.51535 -10.94259 -10.72438 -10.40250 -10.13168 -9.83578 -7.94880 -6.02689 1.36885 1.40714 1.48592 1.90703 2.49421 2.69419 3.28101 3.81741 3.91620 4.19003 4.48689 4.71546 4.73703 4.88192 4.94075 5.08197 5.14139 5.25492 5.27948 5.48613 5.51247 5.71872 5.77555 6.11708 6.19856 6.26434 6.37546 6.57662 6.99258 7.57770 7.62623 9.03902 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046842 B = 0.013924 C = 0.011857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.609551 B = 2010.449205 C = 2360.910905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.073 3.927 3 C -0.119 4.119 4 C -0.493 4.493 5 H 0.034 0.966 6 C 0.018 3.982 7 N -0.906 5.906 8 Si 0.931 3.069 9 H -0.291 1.291 10 H -0.279 1.279 11 H -0.278 1.278 12 C -0.112 4.112 13 H 0.087 0.913 14 C -0.128 4.128 15 C 0.106 3.894 16 N -0.736 5.736 17 C 0.516 3.484 18 O -0.573 6.573 19 H 0.043 0.957 20 H 0.053 0.947 21 H 0.004 0.996 22 H 0.025 0.975 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.255 0.745 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 0.290 13.315 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 C -0.177 4.177 4 C -0.532 4.532 5 H 0.052 0.948 6 C -0.179 4.179 7 N -0.547 5.547 8 Si 0.759 3.241 9 H -0.218 1.218 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.134 4.134 13 H 0.105 0.895 14 C -0.166 4.166 15 C -0.017 4.017 16 N -0.392 5.392 17 C 0.304 3.696 18 O -0.452 6.452 19 H 0.062 0.938 20 H 0.072 0.928 21 H 0.023 0.977 22 H 0.044 0.956 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.127 0.873 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.304 0.109 12.661 12.665 hybrid contribution -0.035 -1.147 -1.241 1.691 sum 0.269 -1.039 11.419 11.469 Atomic orbital electron populations 1.21725 0.98415 0.97132 1.00650 1.17985 0.92050 0.92764 0.89954 1.21677 0.98216 0.97259 1.00569 1.21347 1.27607 1.12345 0.91870 0.94777 1.25379 0.96177 0.95736 1.00629 1.69918 1.40282 1.21506 1.22985 0.85991 0.78214 0.79009 0.80837 1.21823 1.20423 1.20275 1.22043 1.00510 0.92535 0.98292 0.89509 1.22819 1.03277 0.97569 0.92886 1.22258 1.03253 0.83978 0.92219 1.46316 1.62880 1.19796 1.10205 1.21320 0.76670 0.89604 0.82053 1.90674 1.58240 1.53995 1.42248 0.93848 0.92775 0.97728 0.95622 0.92499 0.93697 0.93519 0.87319 0.90089 0.89105 0.87949 0.75176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 7.74 71.98 0.56 -5.35 16 2 C 0.07 3.52 0.30 -52.93 -0.02 3.51 16 3 C -0.12 -5.37 8.05 71.98 0.58 -4.79 16 4 C -0.49 -28.39 6.81 25.60 0.17 -28.22 16 5 H 0.03 2.09 7.09 -2.91 -0.02 2.07 16 6 C 0.02 1.05 5.10 84.65 0.43 1.48 16 7 N -0.91 -52.28 9.39 21.45 0.20 -52.08 16 8 Si 0.93 47.53 29.54 68.60 2.03 49.55 16 9 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 12 C -0.11 -4.41 2.27 -10.80 -0.02 -4.44 16 13 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 14 C -0.13 -3.40 5.41 31.65 0.17 -3.22 16 15 C 0.11 2.18 7.78 86.83 0.68 2.86 16 16 N -0.74 -21.54 6.24 -459.79 -2.87 -24.40 16 17 C 0.52 21.68 6.40 87.90 0.56 22.25 16 18 O -0.57 -30.57 15.94 -3.05 -0.05 -30.61 16 19 H 0.04 1.76 6.32 -2.38 -0.02 1.75 16 20 H 0.05 2.96 5.97 -2.39 -0.01 2.95 16 21 H 0.00 0.19 6.77 -2.39 -0.02 0.17 16 22 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 2.92 6.06 -2.39 -0.01 2.91 16 24 H 0.04 1.66 7.16 -2.38 -0.02 1.64 16 25 H 0.26 14.24 8.31 -92.71 -0.77 13.46 16 26 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.08 2.24 5.76 -2.38 -0.01 2.23 16 28 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.41 10.21 8.96 -92.71 -0.83 9.38 16 Total: -1.00 -70.70 235.41 2.73 -67.96 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.31 Total: 5.51 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 3.11 Total: -15.92 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.67 Total: -76.48 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.05 Total: -30.61 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.55 kcal Total: -70.70 2.73 -67.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248803.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.357 kcal (2) G-P(sol) polarization free energy of solvation -70.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds