Wall clock time and date at job start Mon Mar 30 2020 01:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 C 1.50702 * 109.47036 * 239.99726 * 2 1 3 5 5 H 1.07998 * 119.99516 * 239.79742 * 4 2 1 6 6 C 1.37878 * 120.00023 * 59.80566 * 4 2 1 7 7 N 1.31518 * 119.99896 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99656 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46998 * 90.00368 * 8 6 4 10 10 H 1.48507 * 109.46660 * 209.99922 * 8 6 4 11 11 H 1.48496 * 109.47121 * 329.99654 * 8 6 4 12 12 N 1.46501 * 109.47190 * 119.99720 * 2 1 3 13 13 C 1.46756 * 124.34905 * 244.37962 * 12 2 1 14 14 C 1.54476 * 105.53453 * 163.21151 * 13 12 2 15 15 C 1.54625 * 101.76942 * 25.20489 * 14 13 12 16 16 C 1.34416 * 124.34842 * 64.19923 * 12 2 1 17 17 O 1.21279 * 124.94200 * 0.43343 * 16 12 2 18 18 H 1.09001 * 109.47125 * 300.00449 * 1 2 3 19 19 H 1.09000 * 109.46590 * 60.00301 * 1 2 3 20 20 H 1.08993 * 109.46976 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47265 * 180.02562 * 3 2 1 22 22 H 1.09008 * 109.46793 * 299.99848 * 3 2 1 23 23 H 1.09001 * 109.47502 * 59.99781 * 3 2 1 24 24 H 0.96997 * 119.99527 * 180.02562 * 7 6 4 25 25 H 1.09005 * 110.39350 * 44.09870 * 13 12 2 26 26 H 1.08999 * 110.11174 * 282.17579 * 13 12 2 27 27 H 1.09003 * 110.97149 * 267.08728 * 14 13 12 28 28 H 1.08998 * 110.97063 * 143.32425 * 14 13 12 29 29 H 1.08992 * 110.48926 * 216.52710 * 15 14 13 30 30 H 1.08999 * 110.59979 * 93.92963 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6559 -1.5866 -1.1312 6 6 1.6960 -0.2418 -2.4827 7 7 0.9363 0.8250 -2.6034 8 14 2.3192 -1.1222 -4.0079 9 1 1.3438 -2.1673 -4.4095 10 1 2.4795 -0.1436 -5.1134 11 1 3.6298 -1.7551 -3.7132 12 7 2.0184 -0.6906 1.1962 13 6 2.7884 -0.0474 2.2673 14 6 2.7044 -1.0099 3.4725 15 6 2.4537 -2.3672 2.7754 16 6 1.8158 -1.9938 1.4554 17 8 1.2137 -2.7602 0.7335 18 1 -0.3633 0.5139 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 3.1300 1.4425 -0.0005 22 1 1.6767 1.9563 -0.8901 23 1 1.6767 1.9564 0.8899 24 1 0.6993 1.1544 -3.4844 25 1 2.3501 0.9172 2.5236 26 1 3.8258 0.0805 1.9583 27 1 1.8715 -0.7468 4.1247 28 1 3.6427 -1.0236 4.0270 29 1 1.7745 -2.9805 3.3674 30 1 3.3943 -2.8925 2.6094 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262856.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:08 Heat of formation + Delta-G solvation = -56.052072 kcal Electronic energy + Delta-G solvation = -13298.116835 eV Core-core repulsion = 11092.503745 eV Total energy + Delta-G solvation = -2205.613090 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.12688 -37.48006 -36.46374 -33.48145 -30.45661 -28.69034 -27.46205 -27.12481 -23.09094 -21.86912 -19.91974 -18.33551 -17.39298 -16.99862 -16.21045 -15.86125 -14.95086 -14.54449 -14.50029 -13.81196 -13.61692 -13.38078 -13.26034 -12.98498 -12.65304 -12.64711 -12.41801 -12.13578 -11.95249 -11.83101 -11.66689 -11.14557 -10.52307 -10.25914 -9.20596 -8.09924 -6.22360 1.34661 1.38111 1.46291 1.95155 2.36788 2.64082 3.13185 3.68768 3.81071 4.15629 4.44555 4.65145 4.76697 4.77893 4.82924 4.84789 4.91692 5.01266 5.14836 5.20590 5.31569 5.46120 5.58296 5.73310 5.90427 6.23980 6.30245 6.71411 6.88723 7.38505 7.66753 8.89592 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044627 B = 0.013411 C = 0.012000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.274926 B = 2087.338703 C = 2332.825260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.288 3.712 3 C -0.124 4.124 4 C -0.517 4.517 5 H 0.029 0.971 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.949 3.051 9 H -0.287 1.287 10 H -0.270 1.270 11 H -0.277 1.277 12 N -0.607 5.607 13 C 0.089 3.911 14 C -0.112 4.112 15 C -0.147 4.147 16 C 0.484 3.516 17 O -0.595 6.595 18 H 0.030 0.970 19 H 0.073 0.927 20 H 0.010 0.990 21 H 0.037 0.963 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.264 0.736 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.768 1.015 11.356 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.206 3.794 3 C -0.183 4.183 4 C -0.556 4.556 5 H 0.047 0.953 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.775 3.225 9 H -0.214 1.214 10 H -0.195 1.195 11 H -0.203 1.203 12 N -0.339 5.339 13 C -0.033 4.033 14 C -0.149 4.149 15 C -0.187 4.187 16 C 0.272 3.728 17 O -0.477 6.477 18 H 0.049 0.951 19 H 0.092 0.908 20 H 0.029 0.971 21 H 0.056 0.944 22 H 0.091 0.909 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.140 0.860 29 H 0.124 0.876 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.371 0.829 10.770 11.653 hybrid contribution 0.015 -0.593 -1.319 1.446 sum 4.386 0.237 9.451 10.422 Atomic orbital electron populations 1.21934 0.98378 0.98413 1.00336 1.18052 0.90272 0.90270 0.80852 1.21814 0.99082 0.95975 1.01382 1.21366 1.31015 1.11361 0.91822 0.95285 1.25405 0.95417 0.95813 1.00913 1.69861 1.37054 1.23454 1.23935 0.85706 0.78352 0.78488 0.79907 1.21358 1.19504 1.20257 1.48960 1.52960 1.10127 1.21877 1.22271 0.96154 0.97960 0.86960 1.22619 1.05363 0.91122 0.95798 1.22366 1.02869 1.00487 0.93003 1.21793 0.79582 0.82463 0.88923 1.90608 1.45425 1.55515 1.56149 0.95148 0.90813 0.97089 0.94391 0.90869 0.93683 0.92664 0.89814 0.91298 0.89007 0.86028 0.87567 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 8.31 71.98 0.60 -6.29 16 2 C 0.29 14.57 0.82 2.86 0.00 14.57 16 3 C -0.12 -5.61 7.37 71.98 0.53 -5.08 16 4 C -0.52 -30.06 7.36 25.60 0.19 -29.87 16 5 H 0.03 1.81 7.43 -2.91 -0.02 1.79 16 6 C 0.02 1.35 5.15 84.65 0.44 1.78 16 7 N -0.90 -50.72 9.35 21.45 0.20 -50.52 16 8 Si 0.95 46.16 29.54 68.60 2.03 48.19 16 9 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 12 N -0.61 -26.10 2.82 -775.04 -2.19 -28.29 16 13 C 0.09 2.61 6.18 86.83 0.54 3.14 16 14 C -0.11 -2.30 7.18 31.65 0.23 -2.07 16 15 C -0.15 -4.12 6.86 30.59 0.21 -3.91 16 16 C 0.48 21.41 7.26 87.90 0.64 22.05 16 17 O -0.60 -33.05 15.97 -3.03 -0.05 -33.10 16 18 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 19 H 0.07 4.10 6.05 -2.39 -0.01 4.08 16 20 H 0.01 0.57 7.09 -2.39 -0.02 0.56 16 21 H 0.04 1.62 8.02 -2.39 -0.02 1.61 16 22 H 0.07 3.68 6.09 -2.38 -0.01 3.67 16 23 H 0.04 1.72 7.19 -2.39 -0.02 1.70 16 24 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.08 2.23 7.03 -2.38 -0.02 2.22 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -71.01 241.56 4.47 -66.54 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.11 Total: 2.85 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 3.37 Total: -5.68 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -1.99 Total: -78.81 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.05 Total: -33.10 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -71.01 4.47 -66.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262856.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.490 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds