Wall clock time and date at job start Mon Mar 30 2020 02:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46859 * 2 1 4 4 C 1.50700 * 109.47213 * 239.99623 * 2 1 3 5 5 H 1.07994 * 119.99745 * 244.31569 * 4 2 1 6 6 C 1.37877 * 119.99740 * 64.31639 * 4 2 1 7 7 N 1.31518 * 119.99389 * 197.15676 * 6 4 2 8 8 Si 1.86792 * 120.00291 * 17.16016 * 6 4 2 9 9 H 1.48497 * 109.47358 * 92.74085 * 8 6 4 10 10 H 1.48507 * 109.47044 * 212.74117 * 8 6 4 11 11 H 1.48500 * 109.47423 * 332.73987 * 8 6 4 12 12 C 1.52998 * 109.46918 * 119.99216 * 2 1 3 13 13 H 1.09000 * 109.40292 * 53.90483 * 12 2 1 14 14 C 1.53067 * 109.39953 * 173.72963 * 12 2 1 15 15 C 1.53343 * 108.42836 * 169.03218 * 14 12 2 16 16 C 1.52921 * 108.67199 * 292.46748 * 15 14 12 17 17 N 1.45755 * 110.48826 * 50.75166 * 16 15 14 18 18 C 1.33361 * 124.10455 * 341.20952 * 17 16 15 19 19 O 1.21275 * 118.24305 * 181.94311 * 18 17 16 20 20 H 1.09003 * 109.47727 * 309.22173 * 1 2 3 21 21 H 1.08999 * 109.47299 * 69.22396 * 1 2 3 22 22 H 1.09006 * 109.47198 * 189.22299 * 1 2 3 23 23 H 0.96994 * 119.99708 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.67760 * 49.29427 * 14 12 2 25 25 H 1.09003 * 109.67590 * 288.76593 * 14 12 2 26 26 H 1.08999 * 109.60898 * 172.71484 * 15 14 12 27 27 H 1.08998 * 109.73969 * 52.30331 * 15 14 12 28 28 H 1.08998 * 109.30319 * 290.44026 * 16 15 14 29 29 H 1.09007 * 109.13410 * 170.95588 * 16 15 14 30 30 H 0.97000 * 117.94670 * 160.91613 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5945 -1.6274 -1.1327 6 6 1.7742 -0.1898 -2.4807 7 7 1.9021 -0.9479 -3.5478 8 14 1.2429 1.5920 -2.6590 9 1 2.4373 2.4442 -2.8877 10 1 0.3160 1.7191 -3.8124 11 1 0.5528 2.0294 -1.4190 12 6 2.0399 -0.7211 1.2493 13 1 1.5895 -1.7122 1.3046 14 6 3.5624 -0.8582 1.1714 15 6 4.0775 -1.3268 2.5376 16 6 3.8580 -0.2059 3.5544 17 7 2.4809 0.2687 3.5012 18 6 1.6579 0.0619 2.4723 19 8 0.5429 0.5358 2.5251 20 1 -0.3635 0.6498 0.7961 21 1 -0.3634 0.3645 -0.9608 22 1 -0.3634 -1.0144 0.1647 23 1 1.7202 -0.5818 -4.4274 24 1 4.0055 0.1063 0.9233 25 1 3.8264 -1.5908 0.4087 26 1 5.1411 -1.5550 2.4689 27 1 3.5321 -2.2169 2.8511 28 1 4.5327 0.6204 3.3309 29 1 4.0703 -0.5841 4.5545 30 1 2.1405 0.7624 4.2635 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261266935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:11 Heat of formation + Delta-G solvation = -49.896632 kcal Electronic energy + Delta-G solvation = -13092.785214 eV Core-core repulsion = 10887.439044 eV Total energy + Delta-G solvation = -2205.346171 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.94013 -36.01296 -34.98809 -32.11158 -30.69892 -28.30921 -25.01529 -23.85463 -22.13367 -19.98528 -18.52260 -16.86450 -16.84325 -15.35828 -14.95103 -14.18202 -13.85115 -13.61407 -13.26595 -12.97658 -12.39053 -11.85488 -11.67903 -11.46013 -10.99193 -10.69062 -10.48625 -10.11104 -9.93811 -9.75969 -9.68401 -9.09322 -8.76917 -8.56102 -8.24584 -6.05437 -3.98103 3.21755 3.35432 3.44987 3.54006 3.67918 4.51502 4.98969 5.05754 5.18914 5.30156 5.37127 5.66167 5.76266 5.97401 6.08225 6.16279 6.48610 6.62674 6.78278 6.89364 7.05491 7.14741 7.23981 7.43425 7.60965 7.76708 7.89855 8.53429 8.77456 9.00845 9.62248 11.07094 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045024 B = 0.012554 C = 0.011048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.741250 B = 2229.759807 C = 2533.756268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.034 3.966 3 H 0.020 0.980 4 C -0.518 4.518 5 H 0.075 0.925 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.861 3.139 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.253 1.253 12 C -0.082 4.082 13 H 0.093 0.907 14 C -0.107 4.107 15 C -0.141 4.141 16 C 0.114 3.886 17 N -0.731 5.731 18 C 0.519 3.481 19 O -0.551 6.551 20 H 0.054 0.946 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.262 0.738 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.849 0.943 12.400 13.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.014 3.986 3 H 0.038 0.962 4 C -0.555 4.555 5 H 0.093 0.907 6 C -0.125 4.125 7 N -0.531 5.531 8 Si 0.688 3.312 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.177 1.177 12 C -0.103 4.103 13 H 0.111 0.889 14 C -0.145 4.145 15 C -0.179 4.179 16 C -0.011 4.011 17 N -0.383 5.383 18 C 0.307 3.693 19 O -0.429 6.429 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.337 1.043 12.015 12.816 hybrid contribution -0.239 1.080 0.050 1.108 sum 4.098 2.123 12.064 12.917 Atomic orbital electron populations 1.22284 0.98019 1.00205 0.99703 1.18926 0.93067 0.95216 0.91361 0.96153 1.20938 1.35804 1.10168 0.88613 0.90673 1.24894 0.94432 0.97287 0.95869 1.69998 1.49307 1.35231 0.98600 0.87182 0.78767 0.86856 0.78399 1.20871 1.21526 1.17653 1.21225 0.96709 0.99738 0.92629 0.88862 1.21630 0.94530 1.02859 0.95432 1.21976 1.01993 0.97631 0.96290 1.21315 0.82773 0.97315 0.99659 1.45620 1.13616 1.58547 1.20543 1.20875 0.84292 0.79759 0.84341 1.90627 1.21379 1.50719 1.80206 0.92712 0.94540 0.94476 0.92821 0.91552 0.89525 0.90430 0.91459 0.92191 0.91529 0.77671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 7.85 37.16 0.29 -3.26 16 2 C 0.03 0.82 1.37 -91.78 -0.13 0.69 16 3 H 0.02 0.52 6.74 -51.93 -0.35 0.17 16 4 C -0.52 -14.20 8.25 -34.44 -0.28 -14.48 16 5 H 0.08 2.15 6.78 -52.49 -0.36 1.80 16 6 C 0.08 2.22 5.27 -17.82 -0.09 2.13 16 7 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 8 Si 0.86 21.94 25.79 -169.99 -4.38 17.55 16 9 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 11 H -0.25 -6.33 5.65 56.52 0.32 -6.02 16 12 C -0.08 -1.64 2.02 -92.00 -0.19 -1.83 16 13 H 0.09 1.88 8.10 -51.93 -0.42 1.46 16 14 C -0.11 -1.82 4.71 -26.52 -0.12 -1.94 16 15 C -0.14 -1.74 6.02 -26.59 -0.16 -1.90 16 16 C 0.11 1.27 7.17 -4.48 -0.03 1.24 16 17 N -0.73 -10.53 5.45 -61.39 -0.33 -10.87 16 18 C 0.52 9.88 7.29 -11.88 -0.09 9.80 16 19 O -0.55 -12.33 14.40 5.56 0.08 -12.25 16 20 H 0.05 1.33 5.67 -51.93 -0.29 1.04 16 21 H 0.04 0.91 5.21 -51.93 -0.27 0.64 16 22 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 25 H 0.09 1.58 6.81 -51.93 -0.35 1.23 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.39 4.92 8.80 -40.82 -0.36 4.56 16 LS Contribution 234.56 15.07 3.53 3.53 Total: -1.00 -31.95 234.56 -5.28 -37.23 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.15 Total: 0.73 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.80 Total: -9.56 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.44 Total: -37.25 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.38 Total: 17.55 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.95 -5.28 -37.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.662 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds