Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46859 * 2 1 4 4 C 1.50700 * 109.47213 * 239.99623 * 2 1 3 5 5 H 1.07994 * 119.99745 * 244.31569 * 4 2 1 6 6 C 1.37877 * 119.99740 * 64.31639 * 4 2 1 7 7 N 1.31518 * 119.99389 * 197.15676 * 6 4 2 8 8 Si 1.86792 * 120.00291 * 17.16016 * 6 4 2 9 9 H 1.48497 * 109.47358 * 92.74085 * 8 6 4 10 10 H 1.48507 * 109.47044 * 212.74117 * 8 6 4 11 11 H 1.48500 * 109.47423 * 332.73987 * 8 6 4 12 12 C 1.52998 * 109.46918 * 119.99216 * 2 1 3 13 13 H 1.09000 * 109.40292 * 53.90483 * 12 2 1 14 14 C 1.53067 * 109.39953 * 173.72963 * 12 2 1 15 15 C 1.53343 * 108.42836 * 169.03218 * 14 12 2 16 16 C 1.52921 * 108.67199 * 292.46748 * 15 14 12 17 17 N 1.45755 * 110.48826 * 50.75166 * 16 15 14 18 18 C 1.33361 * 124.10455 * 341.20952 * 17 16 15 19 19 O 1.21275 * 118.24305 * 181.94311 * 18 17 16 20 20 H 1.09003 * 109.47727 * 309.22173 * 1 2 3 21 21 H 1.08999 * 109.47299 * 69.22396 * 1 2 3 22 22 H 1.09006 * 109.47198 * 189.22299 * 1 2 3 23 23 H 0.96994 * 119.99708 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.67760 * 49.29427 * 14 12 2 25 25 H 1.09003 * 109.67590 * 288.76593 * 14 12 2 26 26 H 1.08999 * 109.60898 * 172.71484 * 15 14 12 27 27 H 1.08998 * 109.73969 * 52.30331 * 15 14 12 28 28 H 1.08998 * 109.30319 * 290.44026 * 16 15 14 29 29 H 1.09007 * 109.13410 * 170.95588 * 16 15 14 30 30 H 0.97000 * 117.94670 * 160.91613 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5945 -1.6274 -1.1327 6 6 1.7742 -0.1898 -2.4807 7 7 1.9021 -0.9479 -3.5478 8 14 1.2429 1.5920 -2.6590 9 1 2.4373 2.4442 -2.8877 10 1 0.3160 1.7191 -3.8124 11 1 0.5528 2.0294 -1.4190 12 6 2.0399 -0.7211 1.2493 13 1 1.5895 -1.7122 1.3046 14 6 3.5624 -0.8582 1.1714 15 6 4.0775 -1.3268 2.5376 16 6 3.8580 -0.2059 3.5544 17 7 2.4809 0.2687 3.5012 18 6 1.6579 0.0619 2.4723 19 8 0.5429 0.5358 2.5251 20 1 -0.3635 0.6498 0.7961 21 1 -0.3634 0.3645 -0.9608 22 1 -0.3634 -1.0144 0.1647 23 1 1.7202 -0.5818 -4.4274 24 1 4.0055 0.1063 0.9233 25 1 3.8264 -1.5908 0.4087 26 1 5.1411 -1.5550 2.4689 27 1 3.5321 -2.2169 2.8511 28 1 4.5327 0.6204 3.3309 29 1 4.0703 -0.5841 4.5545 30 1 2.1405 0.7624 4.2635 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = -73.336757 kcal Electronic energy + Delta-G solvation = -13093.801654 eV Core-core repulsion = 10887.439044 eV Total energy + Delta-G solvation = -2206.362611 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.37514 -37.39288 -36.72053 -34.05723 -32.26539 -29.76214 -27.13230 -25.20484 -23.53797 -21.75386 -19.91551 -18.86217 -18.14745 -16.94718 -16.54914 -15.80574 -15.35679 -15.11884 -14.90176 -14.39811 -14.27110 -13.55365 -13.32280 -12.94553 -12.85374 -12.35178 -11.98872 -11.94113 -11.64157 -11.54037 -11.53743 -10.98313 -10.60818 -10.14902 -9.92967 -8.28689 -6.23754 1.31587 1.36927 1.49388 1.73566 2.38286 2.47236 3.06086 3.84136 3.95799 4.00970 4.10281 4.42016 4.60667 4.66167 4.80380 4.89001 5.01753 5.07850 5.15409 5.24423 5.31116 5.45874 5.50871 5.68345 5.76551 6.04321 6.35058 6.42859 6.78960 7.37987 7.39114 8.86838 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045024 B = 0.012554 C = 0.011048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.741250 B = 2229.759807 C = 2533.756268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.032 3.968 3 H 0.012 0.988 4 C -0.510 4.510 5 H 0.053 0.947 6 C 0.025 3.975 7 N -0.937 5.937 8 Si 0.916 3.084 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.248 1.248 12 C -0.084 4.084 13 H 0.087 0.913 14 C -0.105 4.105 15 C -0.133 4.133 16 C 0.108 3.892 17 N -0.714 5.714 18 C 0.519 3.481 19 O -0.592 6.592 20 H 0.058 0.942 21 H 0.023 0.977 22 H 0.035 0.965 23 H 0.264 0.736 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.949 1.674 14.546 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.031 0.969 4 C -0.548 4.548 5 H 0.071 0.929 6 C -0.173 4.173 7 N -0.577 5.577 8 Si 0.741 3.259 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.172 1.172 12 C -0.105 4.105 13 H 0.105 0.895 14 C -0.142 4.142 15 C -0.171 4.171 16 C -0.015 4.015 17 N -0.365 5.365 18 C 0.307 3.693 19 O -0.474 6.474 20 H 0.077 0.923 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.127 0.873 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 5.484 1.778 14.207 15.332 hybrid contribution -0.521 0.774 -0.576 1.096 sum 4.963 2.552 13.632 14.730 Atomic orbital electron populations 1.22222 0.98191 1.00179 0.99060 1.18859 0.92858 0.94808 0.92198 0.96940 1.21173 1.34442 1.09296 0.89883 0.92929 1.25610 0.95085 1.00790 0.95787 1.70101 1.51451 1.36952 0.99166 0.86298 0.78717 0.82533 0.78374 1.19836 1.21398 1.17154 1.21098 0.98728 0.99012 0.91705 0.89532 1.21555 0.92386 1.02094 0.98199 1.21953 1.03682 0.98131 0.93315 1.21656 0.80754 0.97520 1.01537 1.45489 1.14404 1.57249 1.19341 1.20521 0.84291 0.79611 0.84914 1.90601 1.23142 1.52493 1.81132 0.92303 0.95783 0.94549 0.92701 0.92231 0.91676 0.87416 0.91070 0.90506 0.87266 0.76163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.84 7.85 71.98 0.56 -6.27 16 2 C 0.03 1.56 1.37 -11.54 -0.02 1.55 16 3 H 0.01 0.63 6.74 -2.39 -0.02 0.61 16 4 C -0.51 -28.48 8.25 25.60 0.21 -28.27 16 5 H 0.05 3.11 6.78 -2.91 -0.02 3.09 16 6 C 0.03 1.48 5.27 84.65 0.45 1.92 16 7 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 8 Si 0.92 45.54 25.79 68.60 1.77 47.30 16 9 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 10 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 11 H -0.25 -12.04 5.65 99.48 0.56 -11.48 16 12 C -0.08 -3.33 2.02 -11.69 -0.02 -3.36 16 13 H 0.09 3.49 8.10 -2.39 -0.02 3.47 16 14 C -0.10 -3.43 4.71 30.73 0.14 -3.29 16 15 C -0.13 -2.82 6.02 30.68 0.18 -2.63 16 16 C 0.11 1.90 7.17 86.49 0.62 2.52 16 17 N -0.71 -18.16 5.45 -467.33 -2.55 -20.70 16 18 C 0.52 18.92 7.29 87.71 0.64 19.56 16 19 O -0.59 -25.90 14.40 -3.02 -0.04 -25.95 16 20 H 0.06 2.85 5.67 -2.39 -0.01 2.84 16 21 H 0.02 1.19 5.21 -2.39 -0.01 1.18 16 22 H 0.04 1.73 8.09 -2.38 -0.02 1.71 16 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.06 2.01 8.10 -2.39 -0.02 1.99 16 25 H 0.06 2.39 6.81 -2.39 -0.02 2.37 16 26 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.40 8.72 8.80 -92.71 -0.82 7.90 16 Total: -1.00 -69.79 234.56 2.43 -67.36 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.18 Total: 8.01 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 2.77 Total: -18.27 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -2.25 Total: -78.46 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.04 Total: -25.95 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.77 Total: 47.30 kcal Total: -69.79 2.43 -67.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.978 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds