Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47911 * 2 1 4 4 C 1.50699 * 109.47164 * 120.00719 * 2 1 3 5 5 H 1.07999 * 120.00534 * 120.00219 * 4 2 1 6 6 C 1.37883 * 119.99917 * 299.99277 * 4 2 1 7 7 N 1.31506 * 120.00088 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99710 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47313 * 89.99693 * 8 6 4 10 10 H 1.48496 * 109.47309 * 209.99662 * 8 6 4 11 11 H 1.48502 * 109.47360 * 329.99651 * 8 6 4 12 12 C 1.53001 * 109.47100 * 240.00107 * 2 1 3 13 13 H 1.09002 * 109.40216 * 299.83439 * 12 2 1 14 14 C 1.53076 * 109.39791 * 59.57037 * 12 2 1 15 15 C 1.53353 * 108.42235 * 169.02766 * 14 12 2 16 16 C 1.52914 * 108.67982 * 292.47263 * 15 14 12 17 17 N 1.45759 * 110.48468 * 50.75237 * 16 15 14 18 18 C 1.33354 * 124.10773 * 340.92319 * 17 16 15 19 19 O 1.21283 * 118.24369 * 182.20042 * 18 17 16 20 20 H 1.08999 * 109.47287 * 59.99606 * 1 2 3 21 21 H 1.08999 * 109.47234 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46764 * 299.99881 * 1 2 3 23 23 H 0.97000 * 119.99848 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.67572 * 288.76152 * 14 12 2 25 25 H 1.09000 * 109.67289 * 49.26436 * 14 12 2 26 26 H 1.09000 * 109.59789 * 52.23339 * 15 14 12 27 27 H 1.09004 * 109.59846 * 172.71282 * 15 14 12 28 28 H 1.08999 * 109.29964 * 290.44255 * 16 15 14 29 29 H 1.08996 * 109.30391 * 171.06279 * 16 15 14 30 30 H 0.97004 * 117.94538 * 161.21160 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8593 3.5564 8 14 0.6250 1.2789 2.6542 9 1 -0.8026 0.8727 2.6998 10 1 0.9761 1.9949 3.9069 11 1 0.8473 2.1764 1.4922 12 6 2.0400 -0.7212 -1.2493 13 1 1.6785 -1.7495 -1.2467 14 6 1.5200 -0.0046 -2.4980 15 6 2.2561 -0.5657 -3.7206 16 6 3.7257 -0.1511 -3.6404 17 7 4.2789 -0.4833 -2.3334 18 6 3.5417 -0.7204 -1.2478 19 8 4.1147 -0.9479 -0.2034 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9035 -0.5281 4.4374 24 1 0.4492 -0.1793 -2.6022 25 1 1.7108 1.0653 -2.4132 26 1 2.1826 -1.6532 -3.7244 27 1 1.8118 -0.1637 -4.6312 28 1 3.8062 0.9237 -3.8030 29 1 4.2900 -0.6725 -4.4135 30 1 5.2439 -0.5311 -2.2470 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261266937.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = -40.355861 kcal Electronic energy + Delta-G solvation = -13140.192930 eV Core-core repulsion = 10935.260478 eV Total energy + Delta-G solvation = -2204.932452 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.74977 -35.84037 -35.04091 -32.03238 -30.63674 -28.17889 -25.35462 -23.76444 -22.05403 -20.05421 -18.51527 -16.63528 -16.43038 -15.54980 -14.79283 -14.48028 -13.76076 -13.45540 -13.28859 -12.94703 -12.44297 -12.06775 -11.73690 -11.26782 -11.03916 -10.73174 -10.64062 -10.57414 -9.95694 -9.77284 -9.27307 -9.00490 -8.52285 -8.43225 -8.18354 -5.80012 -3.74454 3.37597 3.47843 3.50628 3.55089 3.84170 4.59811 4.94237 4.97849 5.13525 5.35489 5.52538 5.61010 5.68697 5.86250 5.96885 6.09025 6.20271 6.30061 6.42471 6.57026 6.75249 6.78403 7.08647 7.39441 7.52434 7.93567 7.98747 8.79540 9.07280 9.41687 9.80639 11.33690 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048791 B = 0.012857 C = 0.011047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.738539 B = 2177.346781 C = 2533.995230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.022 3.978 3 H 0.024 0.976 4 C -0.486 4.486 5 H 0.093 0.907 6 C 0.062 3.938 7 N -0.906 5.906 8 Si 0.881 3.119 9 H -0.282 1.282 10 H -0.301 1.301 11 H -0.271 1.271 12 C -0.080 4.080 13 H 0.094 0.906 14 C -0.123 4.123 15 C -0.136 4.136 16 C 0.116 3.884 17 N -0.740 5.740 18 C 0.512 3.488 19 O -0.503 6.503 20 H 0.030 0.970 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.258 0.742 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 2.383 -15.858 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.003 3.997 3 H 0.042 0.958 4 C -0.524 4.524 5 H 0.111 0.889 6 C -0.137 4.137 7 N -0.546 5.546 8 Si 0.712 3.288 9 H -0.210 1.210 10 H -0.229 1.229 11 H -0.196 1.196 12 C -0.102 4.102 13 H 0.112 0.888 14 C -0.161 4.161 15 C -0.174 4.174 16 C -0.009 4.009 17 N -0.395 5.395 18 C 0.299 3.701 19 O -0.375 6.375 20 H 0.049 0.951 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.842 2.263 -15.091 15.283 hybrid contribution -0.254 0.922 0.126 0.965 sum -1.096 3.186 -14.965 15.339 Atomic orbital electron populations 1.22206 0.98950 1.00750 0.98578 1.19097 0.91623 0.96056 0.92938 0.95766 1.21247 1.29613 1.13762 0.87791 0.88943 1.25004 0.96234 0.96318 0.96121 1.69902 1.46531 1.40593 0.97606 0.86977 0.80644 0.84583 0.76564 1.20977 1.22868 1.19621 1.21142 0.90556 1.01935 0.96526 0.88787 1.21840 1.00257 1.00330 0.93654 1.21876 0.94557 1.01732 0.99212 1.21203 0.95016 0.99624 0.85035 1.45724 1.09943 1.74209 1.09672 1.20379 0.90994 0.76174 0.82579 1.90868 1.71945 1.45808 1.28853 0.95081 0.92846 0.94157 0.93169 0.90895 0.91657 0.91225 0.90659 0.92696 0.91669 0.77654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.33 37.16 0.31 -2.86 16 2 C 0.02 0.53 1.44 -91.77 -0.13 0.40 16 3 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 4 C -0.49 -14.43 7.67 -34.44 -0.26 -14.69 16 5 H 0.09 3.06 6.43 -52.49 -0.34 2.72 16 6 C 0.06 1.91 5.45 -17.82 -0.10 1.82 16 7 N -0.91 -29.61 13.96 55.43 0.77 -28.83 16 8 Si 0.88 23.08 24.37 -169.99 -4.14 18.94 16 9 H -0.28 -7.11 6.87 56.52 0.39 -6.72 16 10 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 11 H -0.27 -6.78 6.53 56.52 0.37 -6.42 16 12 C -0.08 -1.59 2.02 -91.99 -0.19 -1.77 16 13 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 14 C -0.12 -1.80 4.61 -26.51 -0.12 -1.92 16 15 C -0.14 -1.53 6.02 -26.59 -0.16 -1.69 16 16 C 0.12 1.31 7.17 -4.49 -0.03 1.27 16 17 N -0.74 -11.52 5.45 -61.39 -0.33 -11.85 16 18 C 0.51 10.69 7.29 -11.87 -0.09 10.60 16 19 O -0.50 -13.32 14.38 5.56 0.08 -13.24 16 20 H 0.03 0.54 6.68 -51.93 -0.35 0.20 16 21 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.04 0.93 3.27 -51.93 -0.17 0.76 16 23 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 24 H 0.07 0.97 7.08 -51.93 -0.37 0.61 16 25 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 26 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.39 5.57 8.80 -40.82 -0.36 5.21 16 LS Contribution 233.35 15.07 3.52 3.52 Total: -1.00 -35.18 233.35 -4.97 -40.15 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.09 Total: 0.16 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.77 Total: -8.84 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.44 Total: -40.68 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.14 Total: 18.94 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -35.18 -4.97 -40.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266937.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.211 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds