Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47911 * 2 1 4 4 C 1.50699 * 109.47164 * 120.00719 * 2 1 3 5 5 H 1.07999 * 120.00534 * 120.00219 * 4 2 1 6 6 C 1.37883 * 119.99917 * 299.99277 * 4 2 1 7 7 N 1.31506 * 120.00088 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99710 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47313 * 89.99693 * 8 6 4 10 10 H 1.48496 * 109.47309 * 209.99662 * 8 6 4 11 11 H 1.48502 * 109.47360 * 329.99651 * 8 6 4 12 12 C 1.53001 * 109.47100 * 240.00107 * 2 1 3 13 13 H 1.09002 * 109.40216 * 299.83439 * 12 2 1 14 14 C 1.53076 * 109.39791 * 59.57037 * 12 2 1 15 15 C 1.53353 * 108.42235 * 169.02766 * 14 12 2 16 16 C 1.52914 * 108.67982 * 292.47263 * 15 14 12 17 17 N 1.45759 * 110.48468 * 50.75237 * 16 15 14 18 18 C 1.33354 * 124.10773 * 340.92319 * 17 16 15 19 19 O 1.21283 * 118.24369 * 182.20042 * 18 17 16 20 20 H 1.08999 * 109.47287 * 59.99606 * 1 2 3 21 21 H 1.08999 * 109.47234 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46764 * 299.99881 * 1 2 3 23 23 H 0.97000 * 119.99848 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.67572 * 288.76152 * 14 12 2 25 25 H 1.09000 * 109.67289 * 49.26436 * 14 12 2 26 26 H 1.09000 * 109.59789 * 52.23339 * 15 14 12 27 27 H 1.09004 * 109.59846 * 172.71282 * 15 14 12 28 28 H 1.08999 * 109.29964 * 290.44255 * 16 15 14 29 29 H 1.08996 * 109.30391 * 171.06279 * 16 15 14 30 30 H 0.97004 * 117.94538 * 161.21160 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8593 3.5564 8 14 0.6250 1.2789 2.6542 9 1 -0.8026 0.8727 2.6998 10 1 0.9761 1.9949 3.9069 11 1 0.8473 2.1764 1.4922 12 6 2.0400 -0.7212 -1.2493 13 1 1.6785 -1.7495 -1.2467 14 6 1.5200 -0.0046 -2.4980 15 6 2.2561 -0.5657 -3.7206 16 6 3.7257 -0.1511 -3.6404 17 7 4.2789 -0.4833 -2.3334 18 6 3.5417 -0.7204 -1.2478 19 8 4.1147 -0.9479 -0.2034 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9035 -0.5281 4.4374 24 1 0.4492 -0.1793 -2.6022 25 1 1.7108 1.0653 -2.4132 26 1 2.1826 -1.6532 -3.7244 27 1 1.8118 -0.1637 -4.6312 28 1 3.8062 0.9237 -3.8030 29 1 4.2900 -0.6725 -4.4135 30 1 5.2439 -0.5311 -2.2470 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266937.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = -68.585880 kcal Electronic energy + Delta-G solvation = -13141.417075 eV Core-core repulsion = 10935.260478 eV Total energy + Delta-G solvation = -2206.156597 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.24812 -37.34381 -36.71189 -34.04264 -32.17729 -29.63589 -27.23598 -25.30437 -23.34781 -21.77387 -19.92605 -18.58562 -17.98404 -17.15178 -16.56295 -15.90780 -15.26374 -14.93861 -14.88926 -14.38426 -14.21566 -13.80602 -13.25260 -12.72642 -12.71117 -12.48217 -12.04024 -11.91172 -11.69438 -11.61143 -11.13485 -10.87526 -10.66968 -10.10492 -9.84306 -8.13645 -6.12563 1.29145 1.36513 1.46360 1.93264 2.39832 2.56009 3.18804 3.90403 3.96125 4.02896 4.11367 4.41106 4.59660 4.67288 4.77036 4.82048 4.92775 4.99436 5.07575 5.18722 5.21142 5.35219 5.45966 5.70909 5.79418 6.11642 6.45375 6.62194 6.97546 7.45406 7.59414 9.04433 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048791 B = 0.012857 C = 0.011047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.738539 B = 2177.346781 C = 2533.995230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.019 3.981 3 H 0.013 0.987 4 C -0.483 4.483 5 H 0.039 0.961 6 C -0.011 4.011 7 N -0.965 5.965 8 Si 0.953 3.047 9 H -0.261 1.261 10 H -0.308 1.308 11 H -0.248 1.248 12 C -0.082 4.082 13 H 0.086 0.914 14 C -0.117 4.117 15 C -0.131 4.131 16 C 0.105 3.895 17 N -0.725 5.725 18 C 0.505 3.495 19 O -0.580 6.580 20 H 0.079 0.921 21 H 0.054 0.946 22 H 0.026 0.974 23 H 0.258 0.742 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 4.159 -19.459 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.001 4.001 3 H 0.031 0.969 4 C -0.522 4.522 5 H 0.058 0.942 6 C -0.204 4.204 7 N -0.608 5.608 8 Si 0.781 3.219 9 H -0.187 1.187 10 H -0.237 1.237 11 H -0.172 1.172 12 C -0.103 4.103 13 H 0.104 0.896 14 C -0.154 4.154 15 C -0.168 4.168 16 C -0.018 4.018 17 N -0.378 5.378 18 C 0.292 3.708 19 O -0.459 6.459 20 H 0.098 0.902 21 H 0.073 0.927 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.135 0.865 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.560 4.052 -18.804 19.405 hybrid contribution 0.404 0.285 1.132 1.235 sum -2.156 4.337 -17.672 18.324 Atomic orbital electron populations 1.22094 0.96205 1.01511 1.00159 1.19059 0.93765 0.94900 0.92340 0.96865 1.21554 1.27765 1.12321 0.90545 0.94244 1.25998 0.98384 1.00342 0.95673 1.70108 1.49233 1.43223 0.98283 0.85802 0.79277 0.80129 0.76723 1.18719 1.23681 1.17246 1.21085 0.89899 1.01824 0.97481 0.89552 1.21828 1.01736 0.99793 0.92056 1.21915 0.93934 1.01826 0.99136 1.21664 0.95722 1.01448 0.82953 1.45660 1.10130 1.71742 1.10260 1.20719 0.91841 0.75433 0.82757 1.90843 1.73288 1.49637 1.32113 0.90225 0.92654 0.95586 0.93340 0.88820 0.91382 0.91279 0.86463 0.90699 0.88076 0.77053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 8.33 71.98 0.60 -5.10 16 2 C 0.02 0.88 1.44 -11.54 -0.02 0.87 16 3 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 4 C -0.48 -29.93 7.67 25.60 0.20 -29.74 16 5 H 0.04 2.81 6.43 -2.91 -0.02 2.79 16 6 C -0.01 -0.67 5.45 84.66 0.46 -0.21 16 7 N -0.97 -66.38 13.96 21.45 0.30 -66.08 16 8 Si 0.95 48.22 24.37 68.60 1.67 49.89 16 9 H -0.26 -12.23 6.87 99.48 0.68 -11.54 16 10 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 11 H -0.25 -11.52 6.53 99.48 0.65 -10.87 16 12 C -0.08 -3.14 2.02 -11.68 -0.02 -3.16 16 13 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 14 C -0.12 -2.90 4.61 30.74 0.14 -2.76 16 15 C -0.13 -2.24 6.02 30.68 0.18 -2.06 16 16 C 0.10 1.87 7.17 86.49 0.62 2.49 16 17 N -0.73 -21.35 5.45 -467.32 -2.55 -23.90 16 18 C 0.50 21.28 7.29 87.71 0.64 21.92 16 19 O -0.58 -32.62 14.38 -3.04 -0.04 -32.66 16 20 H 0.08 2.41 6.68 -2.39 -0.02 2.40 16 21 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 22 H 0.03 1.11 3.27 -2.39 -0.01 1.10 16 23 H 0.26 16.62 8.31 -92.71 -0.77 15.85 16 24 H 0.09 1.97 7.08 -2.39 -0.02 1.95 16 25 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 26 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 27 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.39 10.90 8.80 -92.71 -0.82 10.09 16 Total: -1.00 -83.78 233.35 2.42 -81.35 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.24 Total: 9.16 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 2.80 Total: -17.76 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -2.25 Total: -89.98 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.04 Total: -32.66 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.67 Total: 49.89 kcal Total: -83.78 2.42 -81.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266937.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.765 kcal (2) G-P(sol) polarization free energy of solvation -83.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds