Wall clock time and date at job start Mon Mar 30 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 13 13 H 1.09003 * 109.40163 * 60.00277 * 12 2 1 14 14 C 1.53069 * 109.40297 * 300.17517 * 12 2 1 15 15 C 1.53307 * 108.43413 * 190.87274 * 14 12 2 16 16 C 1.52922 * 108.60682 * 67.65009 * 15 14 12 17 17 N 1.45749 * 110.49027 * 309.23168 * 16 15 14 18 18 C 1.33351 * 124.10533 * 19.05474 * 17 16 15 19 19 O 1.21288 * 118.24743 * 177.79861 * 18 17 16 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 23 23 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 24 24 H 1.08999 * 109.67078 * 310.70482 * 14 12 2 25 25 H 1.08995 * 109.67310 * 71.23190 * 14 12 2 26 26 H 1.08992 * 109.64447 * 307.90301 * 15 14 12 27 27 H 1.08997 * 109.75601 * 187.45667 * 15 14 12 28 28 H 1.09003 * 109.29566 * 188.91907 * 16 15 14 29 29 H 1.08999 * 109.13717 * 69.44170 * 16 15 14 30 30 H 0.97001 * 117.94983 * 199.08066 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 6 2.0401 -0.7213 1.2492 13 1 1.6761 -1.7487 1.2480 14 6 1.5254 -0.0011 2.4980 15 6 2.2599 -0.5646 3.7199 16 6 3.7306 -0.1538 3.6375 17 7 4.2811 -0.4880 2.3300 18 6 3.5418 -0.7240 1.2455 19 8 4.1128 -0.9534 0.2003 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7095 1.1620 -3.4843 24 1 1.7203 1.0679 2.4116 25 1 0.4542 -0.1717 2.6046 26 1 2.1834 -1.6518 3.7242 27 1 1.8188 -0.1634 4.6323 28 1 4.2944 -0.6766 4.4101 29 1 3.8109 0.9213 3.7981 30 1 5.2457 -0.5426 2.2433 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261266939.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:15 Heat of formation + Delta-G solvation = -49.665759 kcal Electronic energy + Delta-G solvation = -13093.380397 eV Core-core repulsion = 10888.044238 eV Total energy + Delta-G solvation = -2205.336159 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.66177 -35.77757 -34.81330 -32.04597 -30.22056 -27.65801 -25.26413 -23.71014 -21.94756 -19.98870 -18.40115 -16.62156 -16.13337 -15.24882 -14.72570 -14.31796 -13.67580 -13.44569 -13.13195 -12.75818 -12.34609 -11.42407 -11.33503 -11.11036 -10.75902 -10.54033 -10.41408 -10.36410 -10.10163 -9.96039 -9.26971 -8.84657 -8.48789 -8.25403 -8.06849 -5.75379 -3.73789 3.49741 3.51841 3.58750 3.60113 3.89462 4.66969 5.01946 5.07090 5.24670 5.47152 5.59123 5.69830 5.79537 5.96209 6.10720 6.21560 6.43062 6.68068 6.71850 6.96399 7.14198 7.34142 7.43701 7.87760 8.00833 8.06180 8.34822 8.65524 9.11283 9.32153 9.87073 11.32246 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050034 B = 0.012026 C = 0.010238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.488008 B = 2327.685027 C = 2734.380605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 H 0.024 0.976 4 C -0.481 4.481 5 H 0.071 0.929 6 C 0.051 3.949 7 N -0.905 5.905 8 Si 0.891 3.109 9 H -0.280 1.280 10 H -0.292 1.292 11 H -0.279 1.279 12 C -0.091 4.091 13 H 0.088 0.912 14 C -0.120 4.120 15 C -0.137 4.137 16 C 0.117 3.883 17 N -0.740 5.740 18 C 0.516 3.484 19 O -0.515 6.515 20 H 0.025 0.975 21 H 0.009 0.991 22 H 0.085 0.915 23 H 0.255 0.745 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -1.447 12.936 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.040 3.960 3 H 0.042 0.958 4 C -0.520 4.520 5 H 0.089 0.911 6 C -0.147 4.147 7 N -0.547 5.547 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.204 1.204 12 C -0.112 4.112 13 H 0.106 0.894 14 C -0.157 4.157 15 C -0.175 4.175 16 C -0.008 4.008 17 N -0.395 5.395 18 C 0.304 3.696 19 O -0.389 6.389 20 H 0.045 0.955 21 H 0.028 0.972 22 H 0.104 0.896 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.840 -1.457 12.226 12.449 hybrid contribution 0.734 -0.365 -0.733 1.100 sum 2.574 -1.822 11.493 11.917 Atomic orbital electron populations 1.21838 0.98223 0.99038 1.00326 1.18612 0.92531 0.95300 0.89554 0.95782 1.21374 1.28418 1.12454 0.89740 0.91119 1.24926 0.95591 0.95313 0.98875 1.69883 1.38265 1.23652 1.22863 0.86660 0.79344 0.79544 0.82426 1.20620 1.21795 1.20438 1.21387 0.89968 1.01864 0.97959 0.89412 1.21785 1.00226 1.00320 0.93398 1.21886 0.94547 1.01594 0.99433 1.21209 0.95113 0.99637 0.84885 1.45728 1.09878 1.74059 1.09804 1.20515 0.91181 0.75570 0.82371 1.90783 1.72318 1.46705 1.29051 0.95546 0.97167 0.89650 0.93501 0.91650 0.90960 0.91438 0.90744 0.91757 0.92651 0.77844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.63 37.16 0.32 -2.95 16 2 C 0.06 1.51 1.85 -91.77 -0.17 1.34 16 3 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.48 -14.11 7.09 -34.44 -0.24 -14.35 16 5 H 0.07 2.15 6.17 -52.49 -0.32 1.82 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.91 -27.32 11.32 55.43 0.63 -26.69 16 8 Si 0.89 23.34 29.54 -169.99 -5.02 18.32 16 9 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 11 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 12 C -0.09 -1.88 2.02 -91.99 -0.19 -2.07 16 13 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 14 C -0.12 -1.91 4.61 -26.54 -0.12 -2.03 16 15 C -0.14 -1.66 6.02 -26.61 -0.16 -1.82 16 16 C 0.12 1.39 7.16 -4.49 -0.03 1.35 16 17 N -0.74 -11.86 5.45 -61.39 -0.33 -12.19 16 18 C 0.52 10.99 7.29 -11.87 -0.09 10.90 16 19 O -0.52 -13.47 14.37 5.55 0.08 -13.39 16 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.01 0.20 6.69 -51.93 -0.35 -0.15 16 22 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 25 H 0.07 1.09 7.08 -51.93 -0.37 0.73 16 26 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.39 5.65 8.80 -40.82 -0.36 5.29 16 LS Contribution 240.15 15.07 3.62 3.62 Total: -1.00 -33.12 240.15 -6.03 -39.15 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.23 Total: -0.62 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.77 Total: -8.20 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.29 Total: -38.88 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.12 -6.03 -39.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266939.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.515 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds