Wall clock time and date at job start Mon Mar 30 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 13 13 H 1.09003 * 109.40163 * 60.00277 * 12 2 1 14 14 C 1.53069 * 109.40297 * 300.17517 * 12 2 1 15 15 C 1.53307 * 108.43413 * 190.87274 * 14 12 2 16 16 C 1.52922 * 108.60682 * 67.65009 * 15 14 12 17 17 N 1.45749 * 110.49027 * 309.23168 * 16 15 14 18 18 C 1.33351 * 124.10533 * 19.05474 * 17 16 15 19 19 O 1.21288 * 118.24743 * 177.79861 * 18 17 16 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 23 23 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 24 24 H 1.08999 * 109.67078 * 310.70482 * 14 12 2 25 25 H 1.08995 * 109.67310 * 71.23190 * 14 12 2 26 26 H 1.08992 * 109.64447 * 307.90301 * 15 14 12 27 27 H 1.08997 * 109.75601 * 187.45667 * 15 14 12 28 28 H 1.09003 * 109.29566 * 188.91907 * 16 15 14 29 29 H 1.08999 * 109.13717 * 69.44170 * 16 15 14 30 30 H 0.97001 * 117.94983 * 199.08066 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 6 2.0401 -0.7213 1.2492 13 1 1.6761 -1.7487 1.2480 14 6 1.5254 -0.0011 2.4980 15 6 2.2599 -0.5646 3.7199 16 6 3.7306 -0.1538 3.6375 17 7 4.2811 -0.4880 2.3300 18 6 3.5418 -0.7240 1.2455 19 8 4.1128 -0.9534 0.2003 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7095 1.1620 -3.4843 24 1 1.7203 1.0679 2.4116 25 1 0.4542 -0.1717 2.6046 26 1 2.1834 -1.6518 3.7242 27 1 1.8188 -0.1634 4.6323 28 1 4.2944 -0.6766 4.4101 29 1 3.8109 0.9213 3.7981 30 1 5.2457 -0.5426 2.2433 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266939.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:14 Heat of formation + Delta-G solvation = -73.717113 kcal Electronic energy + Delta-G solvation = -13094.423342 eV Core-core repulsion = 10888.044238 eV Total energy + Delta-G solvation = -2206.379104 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.19988 -37.28956 -36.60699 -33.94223 -31.80393 -29.25294 -27.30077 -25.27227 -23.29072 -21.80724 -19.84643 -18.32011 -17.95812 -16.82303 -16.62662 -15.85512 -15.25103 -14.94277 -14.67812 -14.21851 -14.12513 -13.21641 -13.01279 -12.77412 -12.58666 -12.33011 -12.12251 -12.10693 -11.81260 -11.70753 -11.14377 -10.79069 -10.39037 -10.04219 -9.83636 -8.00462 -6.04429 1.36498 1.40430 1.48328 1.94626 2.49217 2.58360 3.27256 3.94260 4.01171 4.05682 4.16309 4.55299 4.68568 4.75585 4.90213 4.96280 5.09301 5.14605 5.20602 5.24334 5.36780 5.47523 5.74366 5.94473 6.13114 6.18906 6.47790 6.60879 7.02305 7.54174 7.62095 9.05001 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050034 B = 0.012026 C = 0.010238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.488008 B = 2327.685027 C = 2734.380605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.056 3.944 3 H -0.013 1.013 4 C -0.494 4.494 5 H 0.053 0.947 6 C 0.001 3.999 7 N -0.927 5.927 8 Si 0.944 3.056 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.288 1.288 12 C -0.089 4.089 13 H 0.086 0.914 14 C -0.115 4.115 15 C -0.130 4.130 16 C 0.106 3.894 17 N -0.725 5.725 18 C 0.510 3.490 19 O -0.580 6.580 20 H 0.030 0.970 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.255 0.745 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -1.796 15.315 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.037 3.963 3 H 0.005 0.995 4 C -0.532 4.532 5 H 0.071 0.929 6 C -0.195 4.195 7 N -0.569 5.569 8 Si 0.771 3.229 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.214 1.214 12 C -0.111 4.111 13 H 0.104 0.896 14 C -0.152 4.152 15 C -0.167 4.167 16 C -0.017 4.017 17 N -0.377 5.377 18 C 0.298 3.702 19 O -0.459 6.459 20 H 0.049 0.951 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.760 -1.798 14.674 14.888 hybrid contribution 0.799 -0.230 -1.380 1.611 sum 2.559 -2.028 13.295 13.690 Atomic orbital electron populations 1.21643 0.96941 0.99259 1.00404 1.18528 0.93557 0.93281 0.90912 0.99529 1.21661 1.27797 1.12138 0.91618 0.92868 1.25630 0.96126 0.96233 1.01525 1.70003 1.39101 1.24572 1.23261 0.85829 0.78079 0.79198 0.79777 1.19509 1.20644 1.21447 1.21237 0.90027 1.01702 0.98098 0.89584 1.21743 1.01366 0.99399 0.92720 1.21905 0.94073 1.01878 0.98854 1.21642 0.95600 1.01284 0.83140 1.45620 1.10155 1.71703 1.10253 1.20649 0.91617 0.75178 0.82770 1.90744 1.73338 1.50011 1.31809 0.95085 0.93662 0.92917 0.93557 0.92350 0.89778 0.91013 0.86765 0.87696 0.91081 0.76928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.63 71.98 0.62 -5.36 16 2 C 0.06 2.93 1.85 -11.54 -0.02 2.91 16 3 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 4 C -0.49 -29.81 7.09 25.60 0.18 -29.63 16 5 H 0.05 3.36 6.17 -2.91 -0.02 3.34 16 6 C 0.00 0.04 5.30 84.66 0.45 0.49 16 7 N -0.93 -57.30 11.32 21.45 0.24 -57.05 16 8 Si 0.94 48.92 29.54 68.60 2.03 50.94 16 9 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 12 C -0.09 -3.67 2.02 -11.68 -0.02 -3.69 16 13 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 14 C -0.11 -3.35 4.61 30.72 0.14 -3.21 16 15 C -0.13 -2.54 6.02 30.67 0.18 -2.35 16 16 C 0.11 2.05 7.16 86.49 0.62 2.67 16 17 N -0.72 -21.78 5.45 -467.31 -2.55 -24.32 16 18 C 0.51 21.69 7.29 87.71 0.64 22.33 16 19 O -0.58 -31.32 14.37 -3.05 -0.04 -31.37 16 20 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.04 1.80 6.69 -2.39 -0.02 1.78 16 22 H 0.05 2.88 6.07 -2.39 -0.01 2.86 16 23 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 24 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 25 H 0.08 2.25 7.08 -2.39 -0.02 2.24 16 26 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 27 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.40 10.86 8.80 -92.71 -0.82 10.05 16 Total: -1.00 -75.15 240.15 2.78 -72.36 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.31 Total: 5.28 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 2.79 Total: -15.84 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -2.30 Total: -81.37 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.04 Total: -31.37 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.94 kcal Total: -75.15 2.78 -72.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266939.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.354 kcal (2) G-P(sol) polarization free energy of solvation -75.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds