Wall clock time and date at job start Mon Mar 30 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.45758 * 117.94513 * 2 1 4 4 C 1.53011 * 110.50255 * 199.08345 * 3 2 1 5 5 C 1.53348 * 108.62280 * 309.24856 * 4 3 2 6 6 C 1.53069 * 108.45717 * 67.52170 * 5 4 3 7 7 H 1.08995 * 109.40030 * 71.20205 * 6 5 4 8 8 C 1.52998 * 109.40331 * 191.03856 * 6 5 4 9 9 C 1.50697 * 109.47263 * 185.00129 * 8 6 5 10 10 H 1.07999 * 119.99800 * 359.97438 * 9 8 6 11 11 C 1.37876 * 120.00247 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99727 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00270 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47287 * 89.99742 * 13 11 9 15 15 H 1.48495 * 109.47057 * 209.99901 * 13 11 9 16 16 H 1.48499 * 109.47122 * 329.99924 * 13 11 9 17 17 C 1.33351 * 117.94905 * 179.97438 * 2 1 3 18 18 O 1.21277 * 118.24755 * 357.76075 * 17 2 1 19 19 H 1.09005 * 109.46958 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47351 * 300.02042 * 1 2 3 21 21 H 1.09003 * 109.47435 * 60.02469 * 1 2 3 22 22 H 1.08999 * 109.29964 * 319.38440 * 3 2 1 23 23 H 1.09001 * 109.30178 * 78.96942 * 3 2 1 24 24 H 1.08996 * 109.64966 * 189.49386 * 4 3 2 25 25 H 1.08995 * 109.59882 * 68.97500 * 4 3 2 26 26 H 1.09002 * 109.67626 * 307.76660 * 5 4 3 27 27 H 1.09004 * 109.67030 * 187.26964 * 5 4 3 28 28 H 1.09003 * 109.46908 * 304.99842 * 8 6 5 29 29 H 1.08994 * 109.47189 * 64.99306 * 8 6 5 30 30 H 0.97000 * 119.99719 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5956 1.1263 -0.4686 5 6 4.2492 -0.0011 0.3397 6 6 3.5839 -1.3239 -0.0480 7 1 3.8880 -1.5999 -1.0577 8 6 4.0179 -2.4172 0.9304 9 6 3.4631 -3.7438 0.4797 10 1 2.8607 -3.8014 -0.4148 11 6 3.7244 -4.8841 1.2094 12 7 4.4584 -4.8141 2.2985 13 14 3.0361 -6.5285 0.6512 14 1 4.0063 -7.1880 -0.2592 15 1 2.8007 -7.3940 1.8347 16 1 1.7539 -6.3107 -0.0657 17 6 2.0899 -1.1780 0.0005 18 8 1.4159 -2.1853 0.0427 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5142 0.8898 21 1 -0.3634 0.5135 -0.8902 22 1 1.6270 1.9718 -0.6697 23 1 2.1430 1.6981 1.0097 24 1 4.1397 2.0565 -0.3049 25 1 3.6107 0.8727 -1.5285 26 1 4.1087 0.1820 1.4050 27 1 5.3144 -0.0456 0.1124 28 1 5.1064 -2.4690 0.9577 29 1 3.6402 -2.1846 1.9260 30 1 4.6419 -5.6162 2.8120 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278406.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:39 Heat of formation + Delta-G solvation = -44.170690 kcal Electronic energy + Delta-G solvation = -12952.515704 eV Core-core repulsion = 10747.417829 eV Total energy + Delta-G solvation = -2205.097875 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.85429 -35.80464 -34.55446 -32.34905 -30.12057 -26.88561 -26.64432 -23.67927 -21.71883 -21.06823 -18.08291 -16.30357 -15.93415 -15.62586 -15.13021 -14.32240 -13.73241 -13.64773 -12.99609 -12.47127 -12.25285 -12.04682 -11.83203 -11.18917 -11.07207 -10.95152 -10.81051 -10.49179 -10.32321 -10.21460 -9.35139 -8.96923 -8.48470 -8.19659 -8.11596 -5.80606 -3.75953 3.45965 3.51171 3.52803 3.57104 3.61161 4.65925 4.99447 5.05023 5.16469 5.36916 5.56946 5.62583 5.67413 5.71205 5.83715 5.96167 6.08348 6.17138 6.24889 6.42644 6.68345 6.82697 6.94282 7.67715 7.77183 8.05658 8.22650 8.59093 9.05273 9.29358 9.84382 11.31918 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048761 B = 0.010972 C = 0.009507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.094118 B = 2551.380008 C = 2944.347448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.625 5.625 3 C 0.121 3.879 4 C -0.135 4.135 5 C -0.121 4.121 6 C -0.094 4.094 7 H 0.090 0.910 8 C 0.038 3.962 9 C -0.487 4.487 10 H 0.066 0.934 11 C 0.049 3.951 12 N -0.908 5.908 13 Si 0.891 3.109 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.273 1.273 17 C 0.516 3.484 18 O -0.513 6.513 19 H 0.090 0.910 20 H 0.049 0.951 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.026 0.974 29 H 0.016 0.984 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 13.391 -4.810 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.362 5.362 3 C -0.003 4.003 4 C -0.173 4.173 5 C -0.158 4.158 6 C -0.115 4.115 7 H 0.108 0.892 8 C 0.000 4.000 9 C -0.525 4.525 10 H 0.084 0.916 11 C -0.150 4.150 12 N -0.550 5.550 13 Si 0.720 3.280 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.198 1.198 17 C 0.305 3.695 18 O -0.386 6.386 19 H 0.108 0.892 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.329 12.708 -4.653 13.936 hybrid contribution -0.394 -0.753 -0.137 0.860 sum -3.723 11.955 -4.791 13.406 Atomic orbital electron populations 1.21600 0.81069 1.04361 0.99938 1.47417 1.06635 1.06226 1.75960 1.21239 0.93332 0.85062 1.00623 1.21903 0.94714 0.99908 1.00768 1.21782 1.00069 0.93902 1.00070 1.21404 0.89589 0.96990 1.03525 0.89235 1.19067 0.96667 0.91367 0.92855 1.21302 1.29630 0.91425 1.10176 0.91594 1.24970 0.95684 0.99091 0.95240 1.69971 1.39846 1.28480 1.16656 0.86587 0.79562 0.83937 0.77924 1.21031 1.21577 1.19822 1.20518 0.91641 0.82027 0.75322 1.90720 1.65693 1.34990 1.47185 0.89166 0.93214 0.93288 0.91720 0.92576 0.90576 0.91362 0.91572 0.91097 0.95570 0.96552 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 10.47 59.84 0.63 1.71 16 2 N -0.63 -10.59 3.21 -182.79 -0.59 -11.18 16 3 C 0.12 1.52 6.40 -4.44 -0.03 1.49 16 4 C -0.14 -1.65 6.03 -26.55 -0.16 -1.81 16 5 C -0.12 -1.92 5.33 -26.52 -0.14 -2.06 16 6 C -0.09 -1.98 2.43 -91.99 -0.22 -2.20 16 7 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 8 C 0.04 1.00 4.37 -27.89 -0.12 0.88 16 9 C -0.49 -14.63 7.65 -34.44 -0.26 -14.89 16 10 H 0.07 2.02 6.60 -52.49 -0.35 1.67 16 11 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 12 N -0.91 -28.58 13.29 55.43 0.74 -27.84 16 13 Si 0.89 23.52 29.54 -169.99 -5.02 18.50 16 14 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 16 H -0.27 -7.27 7.11 56.52 0.40 -6.87 16 17 C 0.52 11.20 7.04 -11.87 -0.08 11.11 16 18 O -0.51 -13.44 12.97 5.56 0.07 -13.37 16 19 H 0.09 1.56 6.59 -51.93 -0.34 1.21 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 26 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 246.47 15.07 3.71 3.71 Total: -1.00 -34.57 246.47 -6.05 -40.61 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -4.47 Total: -6.06 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.49 Total: -4.38 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.15 Total: -39.02 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.50 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -34.57 -6.05 -40.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278406.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.556 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds