Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45750 * 117.95088 * 2 1 4 4 C 1.53099 * 110.39043 * 160.74451 * 3 2 1 5 5 C 1.53348 * 108.52863 * 51.11210 * 4 3 2 6 6 C 1.53071 * 108.42564 * 292.31366 * 5 4 3 7 7 H 1.09004 * 109.32624 * 288.81598 * 6 5 4 8 8 C 1.52995 * 109.39956 * 169.02953 * 6 5 4 9 9 C 1.50701 * 109.47162 * 174.57072 * 8 6 5 10 10 H 1.08000 * 119.99988 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00213 * 180.02562 * 9 8 6 12 12 N 1.31513 * 119.99831 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47340 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47447 * 119.99888 * 13 11 9 16 16 H 1.48508 * 109.46878 * 239.99380 * 13 11 9 17 17 C 1.33355 * 117.94432 * 180.26181 * 2 1 3 18 18 O 1.21281 * 118.24630 * 2.24103 * 17 2 1 19 19 H 1.09002 * 109.47391 * 179.73884 * 1 2 3 20 20 H 1.09001 * 109.46813 * 59.73940 * 1 2 3 21 21 H 1.09004 * 109.47041 * 299.74067 * 1 2 3 22 22 H 1.08999 * 109.30205 * 281.23988 * 3 2 1 23 23 H 1.09005 * 109.30121 * 40.61085 * 3 2 1 24 24 H 1.09000 * 109.80880 * 291.32500 * 4 3 2 25 25 H 1.08995 * 109.68311 * 170.82457 * 4 3 2 26 26 H 1.09003 * 109.67474 * 172.57923 * 5 4 3 27 27 H 1.09003 * 109.70063 * 52.06425 * 5 4 3 28 28 H 1.08999 * 109.47374 * 294.56894 * 8 6 5 29 29 H 1.09004 * 109.47379 * 54.56859 * 8 6 5 30 30 H 0.97006 * 119.99962 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1237 0.4733 5 6 4.2493 0.0001 -0.3397 6 6 3.5838 -1.3244 0.0425 7 1 3.8881 -1.6031 1.0514 8 6 4.0195 -2.4139 -0.9391 9 6 3.4732 -3.7441 -0.4881 10 1 2.8754 -3.8061 0.4092 11 6 3.7375 -4.8820 -1.2205 12 7 4.4659 -4.8065 -2.3128 13 14 3.0597 -6.5306 -0.6618 14 1 2.2774 -6.3468 0.5870 15 1 2.1797 -7.0884 -1.7200 16 1 4.1836 -7.4675 -0.4080 17 6 2.0899 -1.1780 -0.0054 18 8 1.4158 -2.1852 -0.0518 19 1 -0.3634 -1.0277 -0.0047 20 1 -0.3633 0.5179 -0.8877 21 1 -0.3633 0.5098 0.8923 22 1 2.1399 1.6997 -1.0090 23 1 1.6271 1.9718 0.6697 24 1 3.6102 0.8655 1.5321 25 1 4.1402 2.0542 0.3158 26 1 5.3143 -0.0453 -0.1120 27 1 4.1093 0.1873 -1.4043 28 1 3.6365 -2.1820 -1.9329 29 1 5.1081 -2.4602 -0.9709 30 1 4.6515 -5.6071 -2.8283 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = -44.370812 kcal Electronic energy + Delta-G solvation = -12950.050344 eV Core-core repulsion = 10744.943791 eV Total energy + Delta-G solvation = -2205.106553 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.85495 -35.80353 -34.55606 -32.35284 -30.11717 -26.88520 -26.64689 -23.68550 -21.72018 -21.07176 -18.08902 -16.29881 -15.93950 -15.63564 -15.12645 -14.32224 -13.73524 -13.64132 -12.99658 -12.47678 -12.25591 -12.05586 -11.83610 -11.18803 -11.06954 -10.96750 -10.80985 -10.50456 -10.30990 -10.20935 -9.35196 -8.96289 -8.48965 -8.20003 -8.12702 -5.81017 -3.76368 3.45266 3.51365 3.52452 3.57026 3.60839 4.65573 4.99124 5.04996 5.16348 5.36666 5.56631 5.62350 5.67279 5.70920 5.83503 5.96195 6.08465 6.16960 6.24765 6.42526 6.68279 6.82635 6.93969 7.67595 7.77073 8.05439 8.22199 8.58757 9.04860 9.29129 9.84054 11.31530 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048790 B = 0.010954 C = 0.009499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.746516 B = 2555.590407 C = 2946.978444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.625 5.625 3 C 0.121 3.879 4 C -0.135 4.135 5 C -0.121 4.121 6 C -0.094 4.094 7 H 0.090 0.910 8 C 0.037 3.963 9 C -0.486 4.486 10 H 0.066 0.934 11 C 0.048 3.952 12 N -0.908 5.908 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.288 1.288 17 C 0.516 3.484 18 O -0.513 6.513 19 H 0.090 0.910 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.016 0.984 29 H 0.026 0.974 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 13.392 4.857 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.362 5.362 3 C -0.002 4.002 4 C -0.173 4.173 5 C -0.158 4.158 6 C -0.115 4.115 7 H 0.108 0.892 8 C 0.000 4.000 9 C -0.524 4.524 10 H 0.084 0.916 11 C -0.150 4.150 12 N -0.549 5.549 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.215 1.215 17 C 0.305 3.695 18 O -0.387 6.387 19 H 0.108 0.892 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.333 12.711 4.708 13.958 hybrid contribution -0.398 -0.754 0.120 0.861 sum -3.731 11.956 4.828 13.423 Atomic orbital electron populations 1.21601 0.81071 1.04363 0.99940 1.47418 1.06637 1.06233 1.75949 1.21252 0.93323 0.85043 1.00614 1.21912 0.94704 0.99920 1.00736 1.21787 1.00069 0.93934 1.00053 1.21403 0.89576 0.96972 1.03552 0.89234 1.19072 0.96658 0.91424 0.92831 1.21335 1.29821 0.91366 1.09926 0.91580 1.24972 0.95682 0.99105 0.95254 1.69980 1.40020 1.28480 1.16450 0.86517 0.78532 0.84113 0.78744 1.19765 1.21348 1.21460 1.20515 0.91635 0.82025 0.75302 1.90717 1.65693 1.35043 1.47198 0.89164 0.93216 0.93281 0.92544 0.91761 0.91333 0.90599 0.91098 0.91571 0.96545 0.95553 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 10.47 59.85 0.63 1.70 16 2 N -0.63 -10.58 3.21 -182.74 -0.59 -11.16 16 3 C 0.12 1.52 6.40 -4.39 -0.03 1.49 16 4 C -0.13 -1.65 6.03 -26.50 -0.16 -1.81 16 5 C -0.12 -1.92 5.33 -26.51 -0.14 -2.06 16 6 C -0.09 -1.97 2.42 -91.99 -0.22 -2.20 16 7 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 8 C 0.04 1.00 4.37 -27.89 -0.12 0.87 16 9 C -0.49 -14.60 7.66 -34.44 -0.26 -14.86 16 10 H 0.07 2.03 6.64 -52.49 -0.35 1.68 16 11 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 12 N -0.91 -28.55 13.29 55.43 0.74 -27.82 16 13 Si 0.89 23.54 29.54 -169.99 -5.02 18.52 16 14 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 17 C 0.52 11.19 7.04 -11.87 -0.08 11.11 16 18 O -0.51 -13.43 13.01 5.56 0.07 -13.36 16 19 H 0.09 1.55 6.59 -51.93 -0.34 1.21 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 24 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 246.55 15.07 3.72 3.72 Total: -1.00 -34.55 246.55 -6.04 -40.60 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: -4.47 Total: -6.12 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.49 Total: -4.37 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.15 Total: -38.98 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.02 Total: 18.52 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -34.55 -6.04 -40.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.774 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds