Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45750 * 117.95088 * 2 1 4 4 C 1.53099 * 110.39043 * 160.74451 * 3 2 1 5 5 C 1.53348 * 108.52863 * 51.11210 * 4 3 2 6 6 C 1.53071 * 108.42564 * 292.31366 * 5 4 3 7 7 H 1.09004 * 109.32624 * 288.81598 * 6 5 4 8 8 C 1.52995 * 109.39956 * 169.02953 * 6 5 4 9 9 C 1.50701 * 109.47162 * 174.57072 * 8 6 5 10 10 H 1.08000 * 119.99988 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00213 * 180.02562 * 9 8 6 12 12 N 1.31513 * 119.99831 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47340 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47447 * 119.99888 * 13 11 9 16 16 H 1.48508 * 109.46878 * 239.99380 * 13 11 9 17 17 C 1.33355 * 117.94432 * 180.26181 * 2 1 3 18 18 O 1.21281 * 118.24630 * 2.24103 * 17 2 1 19 19 H 1.09002 * 109.47391 * 179.73884 * 1 2 3 20 20 H 1.09001 * 109.46813 * 59.73940 * 1 2 3 21 21 H 1.09004 * 109.47041 * 299.74067 * 1 2 3 22 22 H 1.08999 * 109.30205 * 281.23988 * 3 2 1 23 23 H 1.09005 * 109.30121 * 40.61085 * 3 2 1 24 24 H 1.09000 * 109.80880 * 291.32500 * 4 3 2 25 25 H 1.08995 * 109.68311 * 170.82457 * 4 3 2 26 26 H 1.09003 * 109.67474 * 172.57923 * 5 4 3 27 27 H 1.09003 * 109.70063 * 52.06425 * 5 4 3 28 28 H 1.08999 * 109.47374 * 294.56894 * 8 6 5 29 29 H 1.09004 * 109.47379 * 54.56859 * 8 6 5 30 30 H 0.97006 * 119.99962 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1237 0.4733 5 6 4.2493 0.0001 -0.3397 6 6 3.5838 -1.3244 0.0425 7 1 3.8881 -1.6031 1.0514 8 6 4.0195 -2.4139 -0.9391 9 6 3.4732 -3.7441 -0.4881 10 1 2.8754 -3.8061 0.4092 11 6 3.7375 -4.8820 -1.2205 12 7 4.4659 -4.8065 -2.3128 13 14 3.0597 -6.5306 -0.6618 14 1 2.2774 -6.3468 0.5870 15 1 2.1797 -7.0884 -1.7200 16 1 4.1836 -7.4675 -0.4080 17 6 2.0899 -1.1780 -0.0054 18 8 1.4158 -2.1852 -0.0518 19 1 -0.3634 -1.0277 -0.0047 20 1 -0.3633 0.5179 -0.8877 21 1 -0.3633 0.5098 0.8923 22 1 2.1399 1.6997 -1.0090 23 1 1.6271 1.9718 0.6697 24 1 3.6102 0.8655 1.5321 25 1 4.1402 2.0542 0.3158 26 1 5.3143 -0.0453 -0.1120 27 1 4.1093 0.1873 -1.4043 28 1 3.6365 -2.1820 -1.9329 29 1 5.1081 -2.4602 -0.9709 30 1 4.6515 -5.6071 -2.8283 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261278407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = -68.406158 kcal Electronic energy + Delta-G solvation = -12951.092595 eV Core-core repulsion = 10744.943791 eV Total energy + Delta-G solvation = -2206.148804 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.37282 -37.27933 -36.25761 -34.38759 -31.73424 -28.68377 -27.91313 -25.49190 -23.12278 -22.80431 -19.48905 -18.43882 -17.33705 -17.29192 -16.68434 -16.24026 -15.21990 -15.02123 -14.30879 -14.22460 -13.92732 -13.45456 -13.35314 -12.97850 -12.86814 -12.60500 -12.41810 -12.27958 -12.06008 -11.70367 -11.35559 -10.95431 -10.59346 -10.16533 -9.54190 -8.14810 -6.16829 1.34030 1.36316 1.50585 1.87817 2.24573 2.44606 3.18501 3.82995 3.94816 3.97988 4.09453 4.47953 4.51010 4.62194 4.71243 4.72653 4.93604 4.97071 5.00859 5.14880 5.16179 5.38018 5.46513 5.59869 5.69787 5.85286 6.30558 6.63791 6.93133 7.43442 7.50438 8.97846 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048790 B = 0.010954 C = 0.009499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.746516 B = 2555.590407 C = 2946.978444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.619 5.619 3 C 0.110 3.890 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.093 4.093 7 H 0.089 0.911 8 C 0.044 3.956 9 C -0.500 4.500 10 H 0.053 0.947 11 C -0.008 4.008 12 N -0.940 5.940 13 Si 0.957 3.043 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.271 1.271 17 C 0.508 3.492 18 O -0.575 6.575 19 H 0.055 0.945 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.058 0.942 28 H -0.017 1.017 29 H 0.013 0.987 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 15.448 5.839 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.353 5.353 3 C -0.012 4.012 4 C -0.163 4.163 5 C -0.153 4.153 6 C -0.114 4.114 7 H 0.107 0.893 8 C 0.006 3.994 9 C -0.538 4.538 10 H 0.071 0.929 11 C -0.204 4.204 12 N -0.583 5.583 13 Si 0.783 3.217 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.196 1.196 17 C 0.298 3.702 18 O -0.454 6.454 19 H 0.074 0.926 20 H 0.092 0.908 21 H 0.102 0.898 22 H 0.090 0.910 23 H 0.122 0.878 24 H 0.091 0.909 25 H 0.135 0.865 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.001 0.999 29 H 0.031 0.969 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.627 14.838 5.698 16.303 hybrid contribution -0.328 -1.303 -0.199 1.358 sum -3.955 13.536 5.498 15.136 Atomic orbital electron populations 1.21770 0.79638 1.03075 1.02793 1.47484 1.07847 1.06422 1.73572 1.21687 0.93617 0.83148 1.02713 1.21921 0.94475 0.99879 1.00024 1.21743 1.00723 0.92453 1.00379 1.21242 0.90341 0.98049 1.01757 0.89336 1.18880 0.95383 0.92467 0.92623 1.21624 1.29404 0.93226 1.09542 0.92906 1.25832 0.96123 1.02958 0.95465 1.70083 1.41106 1.29635 1.17432 0.85518 0.78255 0.79845 0.78131 1.19858 1.20912 1.19620 1.20571 0.91643 0.82896 0.75137 1.90680 1.66743 1.37517 1.50442 0.92563 0.90843 0.89754 0.91019 0.87792 0.90883 0.86461 0.89887 0.92296 0.99904 0.96897 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.90 10.47 127.77 1.34 3.24 16 2 N -0.62 -19.71 3.21 -851.26 -2.73 -22.44 16 3 C 0.11 2.27 6.40 86.55 0.55 2.83 16 4 C -0.13 -2.54 6.03 30.74 0.19 -2.35 16 5 C -0.12 -3.48 5.33 30.73 0.16 -3.31 16 6 C -0.09 -3.94 2.42 -11.68 -0.03 -3.97 16 7 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 8 C 0.04 2.43 4.37 29.85 0.13 2.56 16 9 C -0.50 -31.13 7.66 25.60 0.20 -30.93 16 10 H 0.05 3.38 6.64 -2.91 -0.02 3.36 16 11 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 12 N -0.94 -60.61 13.29 21.45 0.28 -60.32 16 13 Si 0.96 49.38 29.54 68.60 2.03 51.40 16 14 H -0.27 -14.04 7.11 99.48 0.71 -13.33 16 15 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 17 C 0.51 22.23 7.04 87.71 0.62 22.85 16 18 O -0.58 -31.31 13.01 -3.03 -0.04 -31.35 16 19 H 0.06 1.95 6.59 -2.39 -0.02 1.93 16 20 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.10 1.45 8.10 -2.38 -0.02 1.43 16 24 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 25 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 1.85 8.09 -2.39 -0.02 1.83 16 28 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 29 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -78.81 246.55 4.26 -74.54 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: 1.10 Total: -2.70 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 3.62 Total: -9.14 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -2.45 Total: -82.76 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.04 Total: -31.35 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.03 Total: 51.40 kcal Total: -78.81 4.26 -74.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.138 kcal (2) G-P(sol) polarization free energy of solvation -78.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds