Wall clock time and date at job start Mon Mar 30 2020 02:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47192 * 119.78778 * 2 1 4 4 C 1.52987 * 108.66450 * 108.02199 * 3 2 1 5 5 C 1.51777 * 110.84670 * 86.49121 * 4 3 2 6 6 C 1.51811 * 113.80232 * 292.92343 * 5 4 3 7 7 C 1.53058 * 110.70724 * 66.88022 * 6 5 4 8 8 H 1.08998 * 109.79576 * 34.86160 * 7 6 5 9 9 C 1.50692 * 109.63619 * 155.36074 * 7 6 5 10 10 H 1.08003 * 120.00276 * 359.00550 * 9 7 6 11 11 C 1.37872 * 120.00258 * 178.99886 * 9 7 6 12 12 N 1.31514 * 120.00332 * 180.02562 * 11 9 7 13 13 Si 1.86803 * 120.00137 * 0.02562 * 11 9 7 14 14 H 1.48492 * 109.47335 * 89.99575 * 13 11 9 15 15 H 1.48499 * 109.47333 * 209.99889 * 13 11 9 16 16 H 1.48500 * 109.46582 * 329.99585 * 13 11 9 17 17 C 1.33371 * 119.78698 * 179.97438 * 2 1 3 18 18 O 1.21287 * 119.89101 * 0.32717 * 17 2 1 19 19 H 1.08999 * 109.47426 * 90.00265 * 1 2 3 20 20 H 1.09005 * 109.47148 * 209.99784 * 1 2 3 21 21 H 1.09001 * 109.47081 * 330.00340 * 1 2 3 22 22 H 1.08997 * 109.60522 * 348.26401 * 3 2 1 23 23 H 1.09002 * 109.60529 * 227.77281 * 3 2 1 24 24 H 1.09002 * 109.19620 * 206.83084 * 4 3 2 25 25 H 1.08998 * 109.19235 * 326.15550 * 4 3 2 26 26 H 1.09002 * 108.61591 * 54.09003 * 5 4 3 27 27 H 1.09000 * 108.61957 * 171.85107 * 5 4 3 28 28 H 1.09003 * 109.25855 * 306.55443 * 6 5 4 29 29 H 1.08999 * 109.22431 * 187.18587 * 6 5 4 30 30 H 0.97000 * 120.00413 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1962 1.2774 0.0000 4 6 2.8286 1.4796 1.3783 5 6 4.1869 0.8065 1.4533 6 6 4.1243 -0.7088 1.3851 7 6 3.6417 -1.1690 0.0074 8 1 4.0166 -0.4921 -0.7602 9 6 4.1387 -2.5657 -0.2627 10 1 4.7535 -3.0709 0.4676 11 6 3.8087 -3.1989 -1.4422 12 7 4.2420 -4.4180 -1.6777 13 14 2.7458 -2.3251 -2.7057 14 1 3.6132 -1.5685 -3.6439 15 1 1.9528 -3.3265 -3.4630 16 1 1.8265 -1.3858 -2.0145 17 6 2.1275 -1.1575 0.0005 18 8 1.5152 -2.2044 -0.0050 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.5054 2.0943 -0.2089 23 1 2.9768 1.2520 -0.7603 24 1 2.9467 2.5469 1.5654 25 1 2.1746 1.0527 2.1387 26 1 4.8003 1.1677 0.6279 27 1 4.6657 1.0925 2.3898 28 1 3.4363 -1.0750 2.1471 29 1 5.1171 -1.1178 1.5726 30 1 4.0101 -4.8633 -2.5077 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287285.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:15 Heat of formation + Delta-G solvation = -29.130725 kcal Electronic energy + Delta-G solvation = -13444.326082 eV Core-core repulsion = 11239.880389 eV Total energy + Delta-G solvation = -2204.445693 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.60057 -35.89318 -34.36490 -32.27571 -30.41087 -27.96220 -25.91517 -23.70073 -22.14220 -20.08247 -18.08598 -16.78587 -16.19639 -15.68838 -14.92487 -13.99905 -13.70207 -13.44425 -13.18634 -12.61286 -12.36573 -12.31659 -11.95758 -11.42857 -11.24074 -11.05673 -10.53293 -10.28858 -10.05674 -9.85250 -9.36382 -9.23262 -8.54253 -8.36818 -7.97732 -5.98512 -3.99813 3.32688 3.43162 3.47759 3.77901 3.95417 4.56397 5.06558 5.14552 5.21540 5.42646 5.53158 5.72941 5.78744 5.82058 5.98961 6.01016 6.16603 6.21751 6.26804 6.40963 6.61214 6.65381 6.90214 7.14018 7.24828 7.64839 8.25782 8.53841 9.02471 9.38285 9.65078 11.13604 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037858 B = 0.017682 C = 0.014246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.421181 B = 1583.152629 C = 1965.044339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.631 5.631 3 C 0.116 3.884 4 C -0.135 4.135 5 C -0.122 4.122 6 C -0.095 4.095 7 C 0.005 3.995 8 H 0.043 0.957 9 C -0.504 4.504 10 H 0.078 0.922 11 C 0.088 3.912 12 N -0.895 5.895 13 Si 0.882 3.118 14 H -0.291 1.291 15 H -0.290 1.290 16 H -0.253 1.253 17 C 0.511 3.489 18 O -0.533 6.533 19 H 0.041 0.959 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 14.052 3.673 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.367 5.367 3 C -0.008 4.008 4 C -0.174 4.174 5 C -0.159 4.159 6 C -0.133 4.133 7 C -0.016 4.016 8 H 0.061 0.939 9 C -0.541 4.541 10 H 0.096 0.904 11 C -0.115 4.115 12 N -0.533 5.533 13 Si 0.711 3.289 14 H -0.219 1.219 15 H -0.216 1.216 16 H -0.177 1.177 17 C 0.302 3.698 18 O -0.409 6.409 19 H 0.060 0.940 20 H 0.089 0.911 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.139 13.301 3.549 14.375 hybrid contribution -0.731 0.381 -0.803 1.151 sum -4.869 13.681 2.746 14.779 Atomic orbital electron populations 1.21481 0.81658 1.01929 1.00687 1.48181 1.05818 1.06891 1.75855 1.21664 0.96220 0.85460 0.97433 1.21785 0.97812 1.00095 0.97702 1.21238 0.96293 0.96930 1.01465 1.21161 1.01812 0.93002 0.97349 1.19586 0.87362 0.99749 0.94950 0.93909 1.20657 1.32045 0.97190 1.04216 0.90430 1.24936 0.94158 0.94431 0.97989 1.69892 1.45422 1.12557 1.25399 0.87000 0.80935 0.80304 0.80649 1.21906 1.21626 1.17745 1.21943 0.92783 0.82012 0.73108 1.90556 1.69846 1.31685 1.48804 0.94007 0.91066 0.92474 0.90861 0.90868 0.91596 0.91687 0.92144 0.92759 0.93068 0.91022 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.35 59.84 0.62 2.02 16 2 N -0.63 -12.01 2.73 -181.11 -0.50 -12.50 16 3 C 0.12 1.68 5.88 -3.67 -0.02 1.66 16 4 C -0.14 -1.78 5.74 -27.36 -0.16 -1.94 16 5 C -0.12 -1.79 5.27 -27.96 -0.15 -1.94 16 6 C -0.10 -1.86 5.09 -27.30 -0.14 -2.00 16 7 C 0.01 0.12 1.39 -92.54 -0.13 -0.01 16 8 H 0.04 0.99 6.24 -51.93 -0.32 0.66 16 9 C -0.50 -14.77 8.59 -34.45 -0.30 -15.07 16 10 H 0.08 2.42 7.88 -52.48 -0.41 2.01 16 11 C 0.09 2.69 5.16 -17.82 -0.09 2.60 16 12 N -0.90 -28.85 13.96 55.43 0.77 -28.08 16 13 Si 0.88 23.61 25.68 -169.99 -4.37 19.25 16 14 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 15 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 16 H -0.25 -6.51 4.39 56.52 0.25 -6.26 16 17 C 0.51 12.24 3.56 -11.25 -0.04 12.20 16 18 O -0.53 -15.01 13.33 5.55 0.07 -14.93 16 19 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.07 1.27 7.38 -51.93 -0.38 0.89 16 21 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 22 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 23 H 0.07 1.10 6.71 -51.93 -0.35 0.75 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 26 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 29 H 0.07 1.41 7.80 -51.93 -0.41 1.00 16 30 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 233.84 15.07 3.52 3.52 Total: -1.00 -34.71 233.84 -5.39 -40.10 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -4.49 Total: -4.88 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.40 Total: -2.48 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.28 Total: -40.58 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.07 Total: -14.93 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.37 Total: 19.25 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -34.71 -5.39 -40.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287285.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.968 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds