Wall clock time and date at job start Mon Mar 30 2020 02:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47192 * 119.78778 * 2 1 4 4 C 1.52987 * 108.66450 * 108.02199 * 3 2 1 5 5 C 1.51777 * 110.84670 * 86.49121 * 4 3 2 6 6 C 1.51811 * 113.80232 * 292.92343 * 5 4 3 7 7 C 1.53058 * 110.70724 * 66.88022 * 6 5 4 8 8 H 1.08998 * 109.79576 * 34.86160 * 7 6 5 9 9 C 1.50692 * 109.63619 * 155.36074 * 7 6 5 10 10 H 1.08003 * 120.00276 * 359.00550 * 9 7 6 11 11 C 1.37872 * 120.00258 * 178.99886 * 9 7 6 12 12 N 1.31514 * 120.00332 * 180.02562 * 11 9 7 13 13 Si 1.86803 * 120.00137 * 0.02562 * 11 9 7 14 14 H 1.48492 * 109.47335 * 89.99575 * 13 11 9 15 15 H 1.48499 * 109.47333 * 209.99889 * 13 11 9 16 16 H 1.48500 * 109.46582 * 329.99585 * 13 11 9 17 17 C 1.33371 * 119.78698 * 179.97438 * 2 1 3 18 18 O 1.21287 * 119.89101 * 0.32717 * 17 2 1 19 19 H 1.08999 * 109.47426 * 90.00265 * 1 2 3 20 20 H 1.09005 * 109.47148 * 209.99784 * 1 2 3 21 21 H 1.09001 * 109.47081 * 330.00340 * 1 2 3 22 22 H 1.08997 * 109.60522 * 348.26401 * 3 2 1 23 23 H 1.09002 * 109.60529 * 227.77281 * 3 2 1 24 24 H 1.09002 * 109.19620 * 206.83084 * 4 3 2 25 25 H 1.08998 * 109.19235 * 326.15550 * 4 3 2 26 26 H 1.09002 * 108.61591 * 54.09003 * 5 4 3 27 27 H 1.09000 * 108.61957 * 171.85107 * 5 4 3 28 28 H 1.09003 * 109.25855 * 306.55443 * 6 5 4 29 29 H 1.08999 * 109.22431 * 187.18587 * 6 5 4 30 30 H 0.97000 * 120.00413 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1962 1.2774 0.0000 4 6 2.8286 1.4796 1.3783 5 6 4.1869 0.8065 1.4533 6 6 4.1243 -0.7088 1.3851 7 6 3.6417 -1.1690 0.0074 8 1 4.0166 -0.4921 -0.7602 9 6 4.1387 -2.5657 -0.2627 10 1 4.7535 -3.0709 0.4676 11 6 3.8087 -3.1989 -1.4422 12 7 4.2420 -4.4180 -1.6777 13 14 2.7458 -2.3251 -2.7057 14 1 3.6132 -1.5685 -3.6439 15 1 1.9528 -3.3265 -3.4630 16 1 1.8265 -1.3858 -2.0145 17 6 2.1275 -1.1575 0.0005 18 8 1.5152 -2.2044 -0.0050 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.5054 2.0943 -0.2089 23 1 2.9768 1.2520 -0.7603 24 1 2.9467 2.5469 1.5654 25 1 2.1746 1.0527 2.1387 26 1 4.8003 1.1677 0.6279 27 1 4.6657 1.0925 2.3898 28 1 3.4363 -1.0750 2.1471 29 1 5.1171 -1.1178 1.5726 30 1 4.0101 -4.8633 -2.5077 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287285.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:14 Heat of formation + Delta-G solvation = -54.652894 kcal Electronic energy + Delta-G solvation = -13445.432807 eV Core-core repulsion = 11239.880389 eV Total energy + Delta-G solvation = -2205.552418 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.26316 -37.45552 -36.03795 -34.33367 -32.11440 -29.35008 -27.65491 -25.21400 -23.88861 -21.40852 -19.87316 -18.71849 -17.90052 -17.36909 -16.57091 -15.93390 -15.03800 -14.97988 -14.84622 -14.29446 -14.13574 -13.67914 -13.32194 -13.19713 -12.71835 -12.57407 -12.31667 -11.89822 -11.53900 -11.50314 -11.27667 -11.20154 -10.78552 -10.30857 -9.49259 -8.32524 -6.37039 1.22859 1.29711 1.33646 2.07225 2.31595 2.36242 3.11002 3.90888 4.03938 4.07848 4.21154 4.46482 4.47076 4.63916 4.67853 4.73946 4.81039 4.93114 5.04155 5.17491 5.23317 5.29510 5.43879 5.55805 5.58486 5.82292 6.18694 6.52316 6.79222 7.31356 7.60512 8.83500 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037858 B = 0.017682 C = 0.014246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.421181 B = 1583.152629 C = 1965.044339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.626 5.626 3 C 0.102 3.898 4 C -0.130 4.130 5 C -0.118 4.118 6 C -0.092 4.092 7 C 0.000 4.000 8 H 0.060 0.940 9 C -0.509 4.509 10 H 0.036 0.964 11 C 0.026 3.974 12 N -0.948 5.948 13 Si 0.942 3.058 14 H -0.268 1.268 15 H -0.303 1.303 16 H -0.237 1.237 17 C 0.507 3.493 18 O -0.590 6.590 19 H 0.047 0.953 20 H 0.046 0.954 21 H 0.107 0.893 22 H 0.118 0.882 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 18.243 3.678 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.359 5.359 3 C -0.020 4.020 4 C -0.168 4.168 5 C -0.155 4.155 6 C -0.130 4.130 7 C -0.021 4.021 8 H 0.078 0.922 9 C -0.546 4.546 10 H 0.054 0.946 11 C -0.172 4.172 12 N -0.588 5.588 13 Si 0.768 3.232 14 H -0.194 1.194 15 H -0.230 1.230 16 H -0.161 1.161 17 C 0.298 3.702 18 O -0.471 6.471 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.125 0.875 22 H 0.137 0.863 23 H 0.090 0.910 24 H 0.130 0.870 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.156 17.587 3.572 18.672 hybrid contribution -0.381 -0.902 -0.692 1.199 sum -5.537 16.685 2.880 17.814 Atomic orbital electron populations 1.21687 0.79701 1.03221 1.01455 1.48186 1.07317 1.07031 1.73386 1.22146 0.97155 0.84231 0.98426 1.21771 0.96030 1.02534 0.96429 1.21208 0.98303 0.92604 1.03420 1.21120 1.00387 0.97193 0.94294 1.19555 0.88189 0.96591 0.97790 0.92201 1.21038 1.30933 0.99753 1.02924 0.94567 1.25828 0.95657 0.95151 1.00517 1.70043 1.47793 1.14614 1.26339 0.86022 0.79553 0.79410 0.78184 1.19441 1.23025 1.16086 1.21600 0.92531 0.82862 0.73232 1.90539 1.70650 1.34062 1.51839 0.93459 0.93496 0.87497 0.86346 0.91033 0.87049 0.92499 0.90964 0.90218 0.94557 0.92277 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 10.35 127.77 1.32 3.69 16 2 N -0.63 -21.63 2.73 -846.09 -2.31 -23.94 16 3 C 0.10 2.39 5.88 86.24 0.51 2.90 16 4 C -0.13 -2.68 5.74 30.19 0.17 -2.51 16 5 C -0.12 -3.01 5.27 29.80 0.16 -2.85 16 6 C -0.09 -3.52 5.09 30.22 0.15 -3.37 16 7 C 0.00 0.01 1.39 -12.04 -0.02 0.00 16 8 H 0.06 2.63 6.24 -2.39 -0.01 2.61 16 9 C -0.51 -30.95 8.59 25.60 0.22 -30.73 16 10 H 0.04 2.41 7.88 -2.91 -0.02 2.39 16 11 C 0.03 1.65 5.16 84.65 0.44 2.09 16 12 N -0.95 -63.84 13.96 21.45 0.30 -63.54 16 13 Si 0.94 49.36 25.68 68.60 1.76 51.12 16 14 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 15 H -0.30 -16.41 7.11 99.48 0.71 -15.71 16 16 H -0.24 -11.68 4.39 99.48 0.44 -11.24 16 17 C 0.51 23.74 3.56 88.11 0.31 24.05 16 18 O -0.59 -33.59 13.33 -3.05 -0.04 -33.63 16 19 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 20 H 0.05 1.60 7.38 -2.38 -0.02 1.58 16 21 H 0.11 2.03 8.03 -2.39 -0.02 2.01 16 22 H 0.12 1.80 7.92 -2.39 -0.02 1.78 16 23 H 0.07 1.76 6.71 -2.39 -0.02 1.75 16 24 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.32 8.05 -2.39 -0.02 1.30 16 26 H 0.07 1.71 7.88 -2.39 -0.02 1.69 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.46 7.86 -2.39 -0.02 1.44 16 29 H 0.06 2.35 7.80 -2.39 -0.02 2.33 16 30 H 0.26 16.68 8.31 -92.71 -0.77 15.91 16 Total: -1.00 -80.47 233.84 3.81 -76.66 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: 0.84 Total: 0.08 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 3.27 Total: -6.73 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -2.01 Total: -87.49 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.04 Total: -33.63 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.76 Total: 51.12 kcal Total: -80.47 3.81 -76.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287285.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.005 kcal (2) G-P(sol) polarization free energy of solvation -80.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds