Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47423 * 2 1 4 4 N 1.46511 * 109.46892 * 119.99621 * 2 1 3 5 5 C 1.34414 * 124.34593 * 300.02318 * 4 2 1 6 6 O 1.21281 * 124.94872 * 0.36538 * 5 4 2 7 7 C 1.51286 * 110.11337 * 180.38758 * 5 4 2 8 8 C 1.54628 * 104.19343 * 16.24920 * 7 5 4 9 9 C 1.46757 * 124.34647 * 120.00033 * 4 2 1 10 10 H 1.09000 * 110.24559 * 282.08620 * 9 4 2 11 11 C 1.50696 * 110.24971 * 44.00462 * 9 4 2 12 12 H 1.07999 * 119.99822 * 0.02562 * 11 9 4 13 13 C 1.37884 * 120.00126 * 179.97438 * 11 9 4 14 14 N 1.31514 * 119.99707 * 180.02562 * 13 11 9 15 15 Si 1.86796 * 119.99956 * 0.27447 * 13 11 9 16 16 H 1.48503 * 109.47407 * 269.72718 * 15 13 11 17 17 H 1.48505 * 109.47281 * 29.72474 * 15 13 11 18 18 H 1.48501 * 109.47274 * 149.72572 * 15 13 11 19 19 H 1.09001 * 109.46740 * 60.00365 * 1 2 3 20 20 H 1.09006 * 109.47190 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47461 * 300.00368 * 1 2 3 22 22 H 1.08996 * 109.47312 * 239.98893 * 2 1 3 23 23 H 1.08997 * 109.47443 * 179.97438 * 3 2 1 24 24 H 1.09007 * 109.46437 * 299.99570 * 3 2 1 25 25 H 1.09000 * 109.47102 * 59.99412 * 3 2 1 26 26 H 1.08997 * 110.49131 * 134.93265 * 7 5 4 27 27 H 1.09008 * 110.48238 * 257.57511 * 7 5 4 28 28 H 1.09005 * 110.97118 * 217.08310 * 8 7 5 29 29 H 1.08997 * 110.96625 * 93.32689 * 8 7 5 30 30 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.7475 -0.3084 2.4562 6 8 1.0643 0.6462 2.7610 7 6 2.4196 -1.2419 3.4389 8 6 3.4717 -1.9925 2.5900 9 6 2.8655 -1.8887 1.1729 10 1 2.2647 -2.7712 0.9528 11 6 3.9592 -1.7342 0.1478 12 1 4.0262 -0.8294 -0.4381 13 6 4.8749 -2.7476 -0.0415 14 7 5.8296 -2.6125 -0.9358 15 14 4.7551 -4.3151 0.9675 16 1 5.5567 -4.1673 2.2088 17 1 3.3355 -4.5682 1.3222 18 1 5.2779 -5.4560 0.1735 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5140 -0.8898 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9562 -0.8901 25 1 1.6767 1.9563 0.8899 26 1 2.9044 -0.6748 4.2334 27 1 1.6957 -1.9423 3.8558 28 1 3.5555 -3.0331 2.9033 29 1 4.4395 -1.4933 2.6377 30 1 6.4741 -3.3252 -1.0687 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261316715.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = -42.099450 kcal Electronic energy + Delta-G solvation = -13191.539865 eV Core-core repulsion = 10986.531806 eV Total energy + Delta-G solvation = -2205.008059 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.73764 -35.84396 -34.40372 -32.47247 -29.31212 -28.18509 -26.65510 -23.46665 -21.75189 -20.90549 -17.94874 -17.02750 -16.07283 -15.22469 -14.68977 -14.11668 -13.51411 -13.15371 -13.05354 -12.74807 -12.47426 -12.16779 -11.82609 -11.54651 -11.19694 -10.93181 -10.73153 -10.60364 -10.49846 -10.26586 -10.05310 -9.41447 -8.83680 -8.75046 -7.74841 -6.25354 -4.27879 3.15877 3.23646 3.26237 3.32635 3.91550 4.23974 5.01666 5.12367 5.45446 5.55214 5.64730 5.70578 5.81797 6.04076 6.08902 6.19718 6.26863 6.34350 6.41383 6.44982 6.60928 6.72492 6.81739 6.99575 7.30756 7.59192 7.97684 8.41582 8.76446 8.99205 9.34712 10.86844 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039676 B = 0.014400 C = 0.011969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.547771 B = 1944.002861 C = 2338.792668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.162 4.162 4 N -0.586 5.586 5 C 0.512 3.488 6 O -0.563 6.563 7 C -0.156 4.156 8 C -0.141 4.141 9 C 0.227 3.773 10 H 0.039 0.961 11 C -0.530 4.530 12 H 0.084 0.916 13 C 0.079 3.921 14 N -0.890 5.890 15 Si 0.874 3.126 16 H -0.272 1.272 17 H -0.263 1.263 18 H -0.289 1.289 19 H 0.059 0.941 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.097 0.903 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 0.408 3.825 7.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 C -0.220 4.220 4 N -0.317 5.317 5 C 0.300 3.700 6 O -0.444 6.444 7 C -0.196 4.196 8 C -0.179 4.179 9 C 0.124 3.876 10 H 0.057 0.943 11 C -0.568 4.568 12 H 0.102 0.898 13 C -0.124 4.124 14 N -0.527 5.527 15 Si 0.701 3.299 16 H -0.198 1.198 17 H -0.188 1.188 18 H -0.215 1.215 19 H 0.078 0.922 20 H 0.070 0.930 21 H 0.084 0.916 22 H 0.115 0.885 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.078 0.828 3.785 7.208 hybrid contribution 0.236 -1.018 0.435 1.132 sum -5.842 -0.191 4.221 7.209 Atomic orbital electron populations 1.22183 0.96102 1.01670 1.02288 1.20776 0.92709 0.92858 0.88438 1.22128 1.01899 0.96193 1.01769 1.48424 1.49290 1.29061 1.04880 1.20820 0.80139 0.84538 0.84509 1.90585 1.41626 1.30047 1.82173 1.22321 0.99668 0.99204 0.98404 1.23093 0.98963 0.99626 0.96221 1.19872 0.90117 0.83707 0.93861 0.94305 1.21090 1.10569 1.04919 1.20213 0.89849 1.24842 0.94731 0.98018 0.94847 1.69877 1.15762 1.33722 1.33344 0.87003 0.79084 0.83343 0.80457 1.19792 1.18776 1.21525 0.92236 0.92969 0.91588 0.88458 0.92081 0.92546 0.91861 0.89288 0.89207 0.91572 0.89686 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.20 37.16 0.34 -2.40 16 2 C 0.15 2.97 2.82 -67.93 -0.19 2.78 16 3 C -0.16 -2.95 9.20 37.16 0.34 -2.60 16 4 N -0.59 -12.29 2.67 -158.68 -0.42 -12.71 16 5 C 0.51 10.60 7.41 -10.86 -0.08 10.52 16 6 O -0.56 -12.67 15.12 5.56 0.08 -12.58 16 7 C -0.16 -2.75 6.86 -26.74 -0.18 -2.93 16 8 C -0.14 -2.77 5.13 -25.10 -0.13 -2.90 16 9 C 0.23 5.03 2.76 -68.17 -0.19 4.85 16 10 H 0.04 0.87 7.08 -51.93 -0.37 0.51 16 11 C -0.53 -13.71 8.50 -34.44 -0.29 -14.00 16 12 H 0.08 2.36 7.32 -52.49 -0.38 1.98 16 13 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 14 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 15 Si 0.87 19.71 24.78 -169.99 -4.21 15.49 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.26 -5.60 6.40 56.52 0.36 -5.24 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 21 H 0.07 1.19 6.77 -51.93 -0.35 0.84 16 22 H 0.10 1.95 7.20 -51.93 -0.37 1.57 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 25 H 0.06 1.21 6.80 -51.93 -0.35 0.86 16 26 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 28 H 0.07 1.23 5.94 -51.93 -0.31 0.92 16 29 H 0.08 1.75 7.90 -51.93 -0.41 1.34 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 240.65 15.07 3.63 3.63 Total: -1.00 -28.79 240.65 -4.89 -33.68 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.26 Total: 1.86 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -0.48 Total: -4.68 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.35 Total: -37.41 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.21 Total: 15.49 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.79 -4.89 -33.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316715.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.415 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds