Wall clock time and date at job start Mon Mar 30 2020 02:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47397 * 2 1 4 4 N 1.46506 * 109.47648 * 119.99819 * 2 1 3 5 5 C 1.34415 * 124.34697 * 299.98268 * 4 2 1 6 6 O 1.21282 * 124.94478 * 0.45313 * 5 4 2 7 7 C 1.51280 * 110.11491 * 180.42311 * 5 4 2 8 8 C 1.54626 * 104.19764 * 16.24959 * 7 5 4 9 9 C 1.46756 * 124.34968 * 119.99320 * 4 2 1 10 10 H 1.09002 * 110.24543 * 43.97622 * 9 4 2 11 11 C 1.50699 * 110.32514 * 282.00994 * 9 4 2 12 12 H 1.08003 * 119.99479 * 2.45197 * 11 9 4 13 13 C 1.37870 * 120.00083 * 182.45976 * 11 9 4 14 14 N 1.31513 * 120.00304 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99984 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47051 * 89.99618 * 15 13 11 17 17 H 1.48499 * 109.47149 * 209.99413 * 15 13 11 18 18 H 1.48498 * 109.46864 * 329.99526 * 15 13 11 19 19 H 1.09002 * 109.46920 * 300.00206 * 1 2 3 20 20 H 1.09000 * 109.47299 * 59.99984 * 1 2 3 21 21 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47221 * 240.00247 * 2 1 3 23 23 H 1.09000 * 109.46909 * 300.00254 * 3 2 1 24 24 H 1.08995 * 109.46808 * 59.99508 * 3 2 1 25 25 H 1.08999 * 109.47192 * 179.97438 * 3 2 1 26 26 H 1.09006 * 110.48460 * 257.56818 * 7 5 4 27 27 H 1.09001 * 110.48415 * 134.92634 * 7 5 4 28 28 H 1.08996 * 110.97243 * 217.08498 * 8 7 5 29 29 H 1.08997 * 110.96807 * 93.32134 * 8 7 5 30 30 H 0.97005 * 120.00150 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7484 -0.3080 2.4562 6 8 1.0645 0.6461 2.7610 7 6 2.4211 -1.2411 3.4387 8 6 3.4728 -1.9919 2.5895 9 6 2.8656 -1.8887 1.1727 10 1 3.6562 -1.7772 0.4308 11 6 2.0363 -3.1102 0.8706 12 1 0.9799 -3.0095 0.6697 13 6 2.6262 -4.3562 0.8507 14 7 3.9126 -4.4788 1.0950 15 14 1.5981 -5.8705 0.4769 16 1 1.5992 -6.1204 -0.9870 17 1 2.1733 -7.0452 1.1800 18 1 0.2048 -5.6494 0.9403 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9564 -0.8900 24 1 1.6767 1.9563 0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6976 -1.9413 3.8564 27 1 2.9065 -0.6736 4.2327 28 1 3.5568 -3.0324 2.9031 29 1 4.4406 -1.4926 2.6364 30 1 4.3277 -5.3554 1.0807 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261316716.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:21 Heat of formation + Delta-G solvation = -48.135498 kcal Electronic energy + Delta-G solvation = -13157.775583 eV Core-core repulsion = 10952.505781 eV Total energy + Delta-G solvation = -2205.269802 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.50482 -35.61905 -34.37864 -32.30492 -29.05691 -27.24796 -26.66767 -23.98778 -21.62108 -20.57493 -17.86318 -16.75723 -15.70023 -15.04060 -14.51274 -14.21644 -13.34512 -13.05447 -12.76497 -12.63297 -12.25146 -11.95384 -11.56505 -11.14093 -11.00977 -10.92903 -10.74798 -10.62447 -10.44767 -10.14010 -10.04560 -9.38957 -8.73022 -8.48140 -7.63336 -6.17781 -4.26950 3.21549 3.29192 3.32609 3.54948 4.05357 4.33453 5.11942 5.33080 5.64634 5.67283 5.82168 5.88432 6.04545 6.05480 6.15589 6.32001 6.38311 6.44999 6.70754 6.74968 6.76926 6.89442 7.16476 7.44197 7.69661 7.79472 8.12729 8.28788 8.77255 9.20283 9.41446 10.86465 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039518 B = 0.013022 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.368102 B = 2149.642809 C = 2423.915302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 C -0.164 4.164 4 N -0.597 5.597 5 C 0.516 3.484 6 O -0.573 6.573 7 C -0.150 4.150 8 C -0.111 4.111 9 C 0.258 3.742 10 H 0.042 0.958 11 C -0.526 4.526 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 H 0.065 0.935 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.045 0.955 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 4.245 -0.906 4.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 C -0.222 4.222 4 N -0.328 5.328 5 C 0.304 3.696 6 O -0.455 6.455 7 C -0.191 4.191 8 C -0.150 4.150 9 C 0.157 3.843 10 H 0.060 0.940 11 C -0.565 4.565 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 H 0.084 0.916 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.103 0.897 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.543 4.609 -0.833 4.931 hybrid contribution -0.438 -1.056 -0.282 1.178 sum -1.981 3.552 -1.114 4.217 Atomic orbital electron populations 1.22140 0.95773 1.02269 1.01867 1.20688 0.93856 0.92004 0.88234 1.22176 1.00953 0.96809 1.02266 1.48675 1.50550 1.28993 1.04589 1.20922 0.79852 0.84076 0.84716 1.90553 1.41832 1.30678 1.82432 1.22259 1.00292 0.98670 0.97837 1.22539 0.94636 1.01749 0.96063 1.19442 0.89229 0.81316 0.94358 0.94024 1.21376 0.95707 0.90816 1.48614 0.92065 1.24908 0.95013 0.98916 0.94798 1.69937 1.09813 1.24313 1.48411 0.86520 0.80464 0.82163 0.78482 1.20563 1.21055 1.19841 0.91589 0.92735 0.92287 0.89741 0.92429 0.91437 0.92912 0.88969 0.90471 0.88167 0.93611 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.20 37.16 0.34 -2.56 16 2 C 0.16 2.95 3.47 -67.93 -0.24 2.71 16 3 C -0.16 -2.74 9.20 37.16 0.34 -2.39 16 4 N -0.60 -12.97 2.46 -158.67 -0.39 -13.36 16 5 C 0.52 11.48 7.41 -10.86 -0.08 11.40 16 6 O -0.57 -13.64 15.12 5.56 0.08 -13.56 16 7 C -0.15 -3.05 6.85 -26.74 -0.18 -3.23 16 8 C -0.11 -2.44 6.26 -25.10 -0.16 -2.59 16 9 C 0.26 6.08 2.99 -68.16 -0.20 5.88 16 10 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 11 C -0.53 -13.49 8.86 -34.44 -0.31 -13.79 16 12 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 13 C 0.07 1.71 5.10 -17.82 -0.09 1.62 16 14 N -0.89 -23.38 11.84 55.43 0.66 -22.72 16 15 Si 0.90 20.21 29.54 -169.99 -5.02 15.18 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H 0.07 1.28 6.77 -51.93 -0.35 0.93 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.08 1.57 8.07 -51.93 -0.42 1.15 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.24 6.80 -51.93 -0.35 0.89 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.10 2.38 6.46 -51.93 -0.34 2.05 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 248.96 15.07 3.75 3.75 Total: -1.00 -27.51 248.96 -5.88 -33.38 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.39 Total: 0.29 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.57 Total: -2.97 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.27 Total: -36.08 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.51 -5.88 -33.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316716.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.753 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds