Wall clock time and date at job start Mon Mar 30 2020 02:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47397 * 2 1 4 4 N 1.46506 * 109.47648 * 119.99819 * 2 1 3 5 5 C 1.34415 * 124.34697 * 299.98268 * 4 2 1 6 6 O 1.21282 * 124.94478 * 0.45313 * 5 4 2 7 7 C 1.51280 * 110.11491 * 180.42311 * 5 4 2 8 8 C 1.54626 * 104.19764 * 16.24959 * 7 5 4 9 9 C 1.46756 * 124.34968 * 119.99320 * 4 2 1 10 10 H 1.09002 * 110.24543 * 43.97622 * 9 4 2 11 11 C 1.50699 * 110.32514 * 282.00994 * 9 4 2 12 12 H 1.08003 * 119.99479 * 2.45197 * 11 9 4 13 13 C 1.37870 * 120.00083 * 182.45976 * 11 9 4 14 14 N 1.31513 * 120.00304 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99984 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47051 * 89.99618 * 15 13 11 17 17 H 1.48499 * 109.47149 * 209.99413 * 15 13 11 18 18 H 1.48498 * 109.46864 * 329.99526 * 15 13 11 19 19 H 1.09002 * 109.46920 * 300.00206 * 1 2 3 20 20 H 1.09000 * 109.47299 * 59.99984 * 1 2 3 21 21 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47221 * 240.00247 * 2 1 3 23 23 H 1.09000 * 109.46909 * 300.00254 * 3 2 1 24 24 H 1.08995 * 109.46808 * 59.99508 * 3 2 1 25 25 H 1.08999 * 109.47192 * 179.97438 * 3 2 1 26 26 H 1.09006 * 110.48460 * 257.56818 * 7 5 4 27 27 H 1.09001 * 110.48415 * 134.92634 * 7 5 4 28 28 H 1.08996 * 110.97243 * 217.08498 * 8 7 5 29 29 H 1.08997 * 110.96807 * 93.32134 * 8 7 5 30 30 H 0.97005 * 120.00150 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7484 -0.3080 2.4562 6 8 1.0645 0.6461 2.7610 7 6 2.4211 -1.2411 3.4387 8 6 3.4728 -1.9919 2.5895 9 6 2.8656 -1.8887 1.1727 10 1 3.6562 -1.7772 0.4308 11 6 2.0363 -3.1102 0.8706 12 1 0.9799 -3.0095 0.6697 13 6 2.6262 -4.3562 0.8507 14 7 3.9126 -4.4788 1.0950 15 14 1.5981 -5.8705 0.4769 16 1 1.5992 -6.1204 -0.9870 17 1 2.1733 -7.0452 1.1800 18 1 0.2048 -5.6494 0.9403 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9564 -0.8900 24 1 1.6767 1.9563 0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6976 -1.9413 3.8564 27 1 2.9065 -0.6736 4.2327 28 1 3.5568 -3.0324 2.9031 29 1 4.4406 -1.4926 2.6364 30 1 4.3277 -5.3554 1.0807 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261316716.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:21 Heat of formation + Delta-G solvation = -63.656185 kcal Electronic energy + Delta-G solvation = -13158.448611 eV Core-core repulsion = 10952.505781 eV Total energy + Delta-G solvation = -2205.942830 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.23327 -37.42274 -35.96843 -34.22240 -30.69670 -29.13946 -28.06781 -25.86909 -23.18113 -22.37484 -19.55882 -18.67380 -17.41162 -16.88731 -16.25230 -15.91440 -14.96153 -14.60498 -14.46777 -14.34134 -13.94254 -13.61551 -12.98375 -12.89132 -12.80382 -12.65098 -12.32650 -12.22265 -12.11831 -11.91966 -11.77973 -11.24293 -10.57770 -10.32868 -9.40312 -8.14062 -6.29698 1.42562 1.45866 1.54028 1.80542 2.35416 2.50765 3.13313 3.72757 4.06782 4.20292 4.23452 4.37559 4.38210 4.65358 4.75058 4.82274 4.92192 4.94399 5.03510 5.12087 5.25803 5.32234 5.38930 5.60475 5.74772 6.02019 6.20114 6.51276 6.79062 7.37558 7.50338 8.88748 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039518 B = 0.013022 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.368102 B = 2149.642809 C = 2423.915302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 C -0.152 4.152 4 N -0.598 5.598 5 C 0.508 3.492 6 O -0.591 6.591 7 C -0.143 4.143 8 C -0.104 4.104 9 C 0.258 3.742 10 H 0.023 0.977 11 C -0.539 4.539 12 H 0.049 0.951 13 C 0.030 3.970 14 N -0.907 5.907 15 Si 0.952 3.048 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.276 1.276 19 H 0.048 0.952 20 H 0.089 0.911 21 H 0.042 0.958 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 4.407 -1.228 4.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.038 3.962 3 C -0.210 4.210 4 N -0.328 5.328 5 C 0.298 3.702 6 O -0.474 6.474 7 C -0.183 4.183 8 C -0.143 4.143 9 C 0.156 3.844 10 H 0.041 0.959 11 C -0.577 4.577 12 H 0.067 0.933 13 C -0.171 4.171 14 N -0.545 5.545 15 Si 0.778 3.222 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.201 1.201 19 H 0.067 0.933 20 H 0.108 0.892 21 H 0.061 0.939 22 H 0.104 0.896 23 H 0.109 0.891 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.825 4.778 -1.166 5.246 hybrid contribution -0.342 -1.089 -0.225 1.163 sum -2.168 3.689 -1.391 4.499 Atomic orbital electron populations 1.22054 0.94915 1.01420 1.02698 1.21027 0.94642 0.93204 0.87295 1.22073 1.00904 0.95091 1.02961 1.48761 1.50114 1.28466 1.05500 1.21204 0.79775 0.84084 0.85180 1.90541 1.42711 1.31474 1.82693 1.22260 0.99755 0.98364 0.97914 1.22377 0.95646 1.00972 0.95269 1.19286 0.88840 0.81496 0.94806 0.95938 1.21496 0.95281 0.91931 1.49003 0.93294 1.25503 0.95912 1.01102 0.94633 1.70012 1.10788 1.24934 1.48768 0.85647 0.78910 0.79312 0.78301 1.20217 1.20563 1.20071 0.93333 0.89237 0.93915 0.89555 0.89113 0.93247 0.92876 0.88709 0.87744 0.90051 0.92447 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.20 71.98 0.66 -4.61 16 2 C 0.14 5.17 3.47 44.99 0.16 5.33 16 3 C -0.15 -4.80 9.20 71.98 0.66 -4.14 16 4 N -0.60 -25.67 2.46 -774.50 -1.91 -27.57 16 5 C 0.51 22.20 7.41 87.90 0.65 22.86 16 6 O -0.59 -27.65 15.12 -3.03 -0.05 -27.70 16 7 C -0.14 -5.61 6.85 30.59 0.21 -5.40 16 8 C -0.10 -4.49 6.26 31.65 0.20 -4.29 16 9 C 0.26 12.14 2.99 44.70 0.13 12.27 16 10 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 11 C -0.54 -27.56 8.86 25.60 0.23 -27.34 16 12 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 13 C 0.03 1.51 5.10 84.65 0.43 1.94 16 14 N -0.91 -47.51 11.84 21.44 0.25 -47.25 16 15 Si 0.95 41.03 29.54 68.60 2.03 43.06 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 H 0.05 1.84 6.77 -2.39 -0.02 1.82 16 20 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 21 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.09 3.12 8.07 -2.39 -0.02 3.10 16 23 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.05 1.74 6.80 -2.39 -0.02 1.73 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.09 3.67 8.14 -2.38 -0.02 3.65 16 27 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.08 3.85 6.46 -2.39 -0.02 3.83 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 Total: -1.00 -56.97 248.96 4.77 -52.20 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.11 Total: 10.65 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 3.33 Total: -3.39 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.65 Total: -74.83 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -56.97 4.77 -52.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316716.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.454 kcal (2) G-P(sol) polarization free energy of solvation -56.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds