Wall clock time and date at job start Mon Mar 30 2020 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.45755 * 117.94250 * 90.00014 * 3 2 1 5 5 C 1.52918 * 110.48603 * 199.07442 * 4 3 2 6 6 C 1.53345 * 108.67393 * 309.24982 * 5 4 3 7 7 C 1.53069 * 108.42603 * 67.52956 * 6 5 4 8 8 H 1.08996 * 109.39946 * 71.14464 * 7 6 5 9 9 C 1.50709 * 109.39993 * 190.97321 * 7 6 5 10 10 H 1.08003 * 119.99790 * 359.97438 * 9 7 6 11 11 C 1.37875 * 119.99728 * 180.02562 * 9 7 6 12 12 N 1.31515 * 120.00302 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99813 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47151 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46881 * 119.99708 * 13 11 9 16 16 H 1.48499 * 109.46942 * 239.99496 * 13 11 9 17 17 C 1.33346 * 117.94817 * 269.73743 * 3 2 1 18 18 O 1.21283 * 118.24314 * 357.78174 * 17 3 2 19 19 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 20 20 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 23 23 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 24 24 H 1.08999 * 109.30291 * 319.38309 * 4 3 2 25 25 H 1.09002 * 109.29910 * 78.97330 * 4 3 2 26 26 H 1.09004 * 109.60659 * 69.00354 * 5 4 3 27 27 H 1.09001 * 109.60805 * 189.32926 * 5 4 3 28 28 H 1.08997 * 109.67773 * 187.26455 * 6 5 4 29 29 H 1.09005 * 109.67387 * 307.79524 * 6 5 4 30 30 H 0.96992 * 120.00047 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2460 2.0252 1.2876 5 6 2.2869 3.5452 1.1260 6 6 3.2667 3.8930 -0.0012 7 6 2.6788 3.3950 -1.3239 8 1 1.8274 4.0175 -1.5988 9 6 3.7290 3.4790 -2.4016 10 1 4.7155 3.8504 -2.1664 11 6 3.4300 3.0827 -3.6878 12 7 2.2285 2.6309 -3.9743 13 14 4.7314 3.1874 -5.0238 14 1 5.9899 3.7258 -4.4478 15 1 4.9805 1.8329 -5.5794 16 1 4.2583 4.0872 -6.1062 17 6 2.2318 1.9687 -1.1779 18 8 2.0504 1.3178 -2.1851 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3635 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.4410 1.7572 1.9718 25 1 3.1964 1.6838 1.6981 26 1 1.2926 3.9130 0.8727 27 1 2.6199 4.0033 2.0574 28 1 3.4069 4.9730 -0.0455 29 1 4.2243 3.4053 0.1814 30 1 2.0183 2.3517 -4.8790 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261321267.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:04 Heat of formation + Delta-G solvation = -27.814298 kcal Electronic energy + Delta-G solvation = -13258.312331 eV Core-core repulsion = 11053.923722 eV Total energy + Delta-G solvation = -2204.388609 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.15226 -35.07183 -34.28097 -31.96758 -29.57450 -28.52340 -24.99264 -23.28101 -21.91748 -20.67432 -17.56138 -16.50473 -15.47015 -15.10304 -14.44699 -14.02388 -13.47647 -13.04889 -12.91435 -12.62085 -12.09490 -11.69732 -11.48689 -11.25774 -10.91502 -10.80626 -10.43572 -10.39740 -10.29088 -10.12002 -9.27474 -9.01039 -8.27008 -7.77861 -7.54467 -5.74470 -3.84583 3.39520 3.47131 3.50044 4.11167 4.38947 4.62799 5.44855 5.47205 5.48198 5.57954 5.75212 5.84821 5.90700 6.03700 6.17222 6.24976 6.30901 6.43824 6.61479 6.71331 6.77226 6.83341 7.10482 7.57515 7.66728 8.03465 8.30451 8.82053 9.11653 9.74712 10.02053 11.25322 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042403 B = 0.013732 C = 0.011199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.164547 B = 2038.592396 C = 2499.673037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.106 3.894 3 N -0.633 5.633 4 C 0.127 3.873 5 C -0.134 4.134 6 C -0.112 4.112 7 C 0.046 3.954 8 H 0.051 0.949 9 C -0.545 4.545 10 H 0.059 0.941 11 C 0.075 3.925 12 N -0.818 5.818 13 Si 0.887 3.113 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.501 3.499 18 O -0.485 6.485 19 H 0.060 0.940 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 -1.360 9.918 10.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.373 5.373 4 C 0.003 3.997 5 C -0.172 4.172 6 C -0.149 4.149 7 C 0.025 3.975 8 H 0.069 0.931 9 C -0.583 4.583 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.451 5.451 13 Si 0.715 3.285 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.212 1.212 17 C 0.290 3.710 18 O -0.355 6.355 19 H 0.079 0.921 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.676 -1.761 9.147 9.465 hybrid contribution 0.615 -0.093 -0.583 0.852 sum -1.061 -1.853 8.564 8.826 Atomic orbital electron populations 1.22070 0.97212 1.00798 1.01861 1.21143 0.93537 0.85409 1.01644 1.48141 1.69280 1.13475 1.06366 1.21059 0.99268 0.93457 0.85938 1.21878 1.01039 0.94674 0.99609 1.21714 0.97800 1.00431 0.95004 1.18720 0.97647 0.88551 0.92622 0.93137 1.20698 0.97635 1.47497 0.92480 0.92301 1.24983 0.95202 0.94566 0.98585 1.70253 1.19180 1.37271 1.18396 0.86638 0.82205 0.77475 0.82211 1.19878 1.21190 1.21151 1.22055 0.76150 0.91618 0.81212 1.90715 1.47726 1.63012 1.34018 0.92136 0.92893 0.93525 0.90305 0.92634 0.92829 0.93632 0.91872 0.91691 0.92461 0.92580 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.23 37.16 0.38 -2.25 16 2 C 0.11 1.94 5.94 -4.04 -0.02 1.91 16 3 N -0.63 -13.07 2.81 -174.95 -0.49 -13.56 16 4 C 0.13 2.07 6.32 -4.49 -0.03 2.04 16 5 C -0.13 -2.18 6.02 -26.59 -0.16 -2.34 16 6 C -0.11 -2.25 5.27 -26.52 -0.14 -2.39 16 7 C 0.05 1.17 2.40 -93.13 -0.22 0.95 16 8 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 9 C -0.55 -15.61 8.49 -34.44 -0.29 -15.90 16 10 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 11 C 0.08 2.22 4.96 -17.82 -0.09 2.13 16 12 N -0.82 -25.30 10.24 55.43 0.57 -24.73 16 13 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 14 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 C 0.50 12.93 7.02 -11.87 -0.08 12.85 16 18 O -0.49 -14.50 12.05 5.55 0.07 -14.43 16 19 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 1.63 7.13 -51.93 -0.37 1.26 16 23 H 0.06 0.83 8.01 -51.93 -0.42 0.42 16 24 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 30 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 245.11 15.07 3.69 3.69 Total: -1.00 -32.74 245.11 -6.39 -39.13 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -4.55 Total: -4.47 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.66 Total: -2.99 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.08 Total: -38.29 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.07 Total: -14.43 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.74 -6.39 -39.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321267.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.315 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds