Wall clock time and date at job start Mon Mar 30 2020 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.45755 * 117.94250 * 90.00014 * 3 2 1 5 5 C 1.52918 * 110.48603 * 199.07442 * 4 3 2 6 6 C 1.53345 * 108.67393 * 309.24982 * 5 4 3 7 7 C 1.53069 * 108.42603 * 67.52956 * 6 5 4 8 8 H 1.08996 * 109.39946 * 71.14464 * 7 6 5 9 9 C 1.50709 * 109.39993 * 190.97321 * 7 6 5 10 10 H 1.08003 * 119.99790 * 359.97438 * 9 7 6 11 11 C 1.37875 * 119.99728 * 180.02562 * 9 7 6 12 12 N 1.31515 * 120.00302 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99813 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47151 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46881 * 119.99708 * 13 11 9 16 16 H 1.48499 * 109.46942 * 239.99496 * 13 11 9 17 17 C 1.33346 * 117.94817 * 269.73743 * 3 2 1 18 18 O 1.21283 * 118.24314 * 357.78174 * 17 3 2 19 19 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 20 20 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 23 23 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 24 24 H 1.08999 * 109.30291 * 319.38309 * 4 3 2 25 25 H 1.09002 * 109.29910 * 78.97330 * 4 3 2 26 26 H 1.09004 * 109.60659 * 69.00354 * 5 4 3 27 27 H 1.09001 * 109.60805 * 189.32926 * 5 4 3 28 28 H 1.08997 * 109.67773 * 187.26455 * 6 5 4 29 29 H 1.09005 * 109.67387 * 307.79524 * 6 5 4 30 30 H 0.96992 * 120.00047 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2460 2.0252 1.2876 5 6 2.2869 3.5452 1.1260 6 6 3.2667 3.8930 -0.0012 7 6 2.6788 3.3950 -1.3239 8 1 1.8274 4.0175 -1.5988 9 6 3.7290 3.4790 -2.4016 10 1 4.7155 3.8504 -2.1664 11 6 3.4300 3.0827 -3.6878 12 7 2.2285 2.6309 -3.9743 13 14 4.7314 3.1874 -5.0238 14 1 5.9899 3.7258 -4.4478 15 1 4.9805 1.8329 -5.5794 16 1 4.2583 4.0872 -6.1062 17 6 2.2318 1.9687 -1.1779 18 8 2.0504 1.3178 -2.1851 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3635 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.4410 1.7572 1.9718 25 1 3.1964 1.6838 1.6981 26 1 1.2926 3.9130 0.8727 27 1 2.6199 4.0033 2.0574 28 1 3.4069 4.9730 -0.0455 29 1 4.2243 3.4053 0.1814 30 1 2.0183 2.3517 -4.8790 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261321267.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:04 Heat of formation + Delta-G solvation = -49.694177 kcal Electronic energy + Delta-G solvation = -13259.261113 eV Core-core repulsion = 11053.923722 eV Total energy + Delta-G solvation = -2205.337391 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.91375 -36.86188 -36.03320 -33.95485 -31.20255 -30.20697 -26.89380 -24.90979 -23.62969 -22.25894 -19.22119 -18.59023 -17.14409 -16.88850 -16.43127 -15.68815 -15.01358 -14.78414 -14.43466 -14.39470 -13.80066 -13.29350 -13.09747 -12.85744 -12.79239 -12.65171 -12.28357 -11.87992 -11.83123 -11.78299 -11.27404 -10.92806 -10.46166 -9.76562 -9.21502 -7.95391 -6.11441 1.37594 1.39769 1.50942 2.37065 2.54479 2.58002 3.32645 4.08121 4.13628 4.17718 4.40171 4.44225 4.59100 4.62563 4.75818 4.85170 4.92560 4.98988 5.15865 5.17383 5.29355 5.34680 5.45757 5.64899 5.83449 6.06106 6.22150 6.74601 7.17557 7.51486 8.10822 9.03705 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042403 B = 0.013732 C = 0.011199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.164547 B = 2038.592396 C = 2499.673037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.102 3.898 3 N -0.631 5.631 4 C 0.117 3.883 5 C -0.127 4.127 6 C -0.105 4.105 7 C 0.033 3.967 8 H 0.018 0.982 9 C -0.562 4.562 10 H 0.059 0.941 11 C 0.019 3.981 12 N -0.853 5.853 13 Si 0.951 3.049 14 H -0.260 1.260 15 H -0.291 1.291 16 H -0.276 1.276 17 C 0.494 3.506 18 O -0.540 6.540 19 H 0.018 0.982 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -1.435 12.466 12.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 N -0.368 5.368 4 C -0.005 4.005 5 C -0.164 4.164 6 C -0.142 4.142 7 C 0.012 3.988 8 H 0.036 0.964 9 C -0.600 4.600 10 H 0.078 0.922 11 C -0.186 4.186 12 N -0.487 5.487 13 Si 0.777 3.223 14 H -0.184 1.184 15 H -0.218 1.218 16 H -0.202 1.202 17 C 0.283 3.717 18 O -0.414 6.414 19 H 0.037 0.963 20 H 0.099 0.901 21 H 0.089 0.911 22 H 0.061 0.939 23 H 0.118 0.882 24 H 0.111 0.889 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.090 -1.821 11.767 11.957 hybrid contribution 0.419 -0.075 -1.277 1.346 sum -0.671 -1.896 10.490 10.681 Atomic orbital electron populations 1.21980 0.95695 1.02375 1.00894 1.21339 0.94782 0.83919 1.02015 1.47989 1.67770 1.14488 1.06597 1.21464 1.01874 0.93162 0.84043 1.21869 0.99613 0.95075 0.99844 1.21604 0.98389 1.00710 0.93545 1.18715 0.96130 0.88821 0.95101 0.96428 1.21137 0.98290 1.46923 0.93673 0.92245 1.25842 0.97203 0.94395 1.01167 1.70454 1.21259 1.38673 1.18325 0.85625 0.80065 0.77149 0.79461 1.18426 1.21787 1.20195 1.21848 0.76032 0.91596 0.82260 1.90681 1.50136 1.64172 1.36451 0.96306 0.90133 0.91092 0.93890 0.88165 0.88939 0.91538 0.92430 0.87092 0.91655 0.92741 0.94318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 10.23 71.98 0.74 -3.93 16 2 C 0.10 3.55 5.94 86.38 0.51 4.07 16 3 N -0.63 -25.12 2.81 -826.62 -2.32 -27.44 16 4 C 0.12 3.31 6.32 86.49 0.55 3.85 16 5 C -0.13 -3.64 6.02 30.68 0.18 -3.46 16 6 C -0.10 -4.06 5.27 30.73 0.16 -3.90 16 7 C 0.03 1.76 2.40 -12.42 -0.03 1.73 16 8 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 9 C -0.56 -32.93 8.49 25.60 0.22 -32.71 16 10 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 11 C 0.02 1.15 4.96 84.65 0.42 1.57 16 12 N -0.85 -55.11 10.24 21.45 0.22 -54.89 16 13 Si 0.95 47.08 29.54 68.60 2.03 49.11 16 14 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 17 C 0.49 26.01 7.02 87.72 0.62 26.63 16 18 O -0.54 -33.75 12.05 -3.04 -0.04 -33.78 16 19 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 20 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.04 1.80 7.13 -2.39 -0.02 1.78 16 23 H 0.10 2.59 8.01 -2.39 -0.02 2.57 16 24 H 0.09 2.00 8.10 -2.39 -0.02 1.98 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.74 8.12 -2.38 -0.02 1.72 16 27 H 0.11 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.05 2.11 8.09 -2.38 -0.02 2.09 16 30 H 0.25 15.42 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -75.33 245.11 4.35 -70.98 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.10 Total: 2.17 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 3.37 Total: -6.15 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -2.10 Total: -82.34 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.04 Total: -33.78 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -75.33 4.35 -70.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321267.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.287 kcal (2) G-P(sol) polarization free energy of solvation -75.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds