Wall clock time and date at job start Mon Mar 30 2020 02:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 N 1.46504 * 109.46987 * 180.02562 * 3 2 1 5 5 C 1.46825 * 124.33333 * 269.93519 * 4 3 2 6 6 C 1.54481 * 105.44388 * 197.00180 * 5 4 3 7 7 C 1.54625 * 101.79703 * 334.62720 * 6 5 4 8 8 H 1.09010 * 110.48568 * 143.45878 * 7 6 5 9 9 C 1.50691 * 110.48972 * 265.96879 * 7 6 5 10 10 H 1.07997 * 119.99996 * 359.97438 * 9 7 6 11 11 C 1.37880 * 120.00506 * 180.02562 * 9 7 6 12 12 N 1.31518 * 119.99485 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 120.00482 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47279 * 89.99766 * 13 11 9 15 15 H 1.48492 * 109.47227 * 210.00108 * 13 11 9 16 16 H 1.48501 * 109.46880 * 330.00369 * 13 11 9 17 17 C 1.34414 * 124.34881 * 89.97619 * 4 3 2 18 18 O 1.21279 * 124.94846 * 359.62238 * 17 4 3 19 19 H 1.08996 * 109.46994 * 59.99760 * 1 2 3 20 20 H 1.09003 * 109.47124 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46414 * 299.99983 * 1 2 3 22 22 H 1.09005 * 109.46966 * 239.99864 * 2 1 3 23 23 H 1.09005 * 109.47221 * 120.00339 * 2 1 3 24 24 H 1.08991 * 109.46953 * 60.00486 * 3 2 1 25 25 H 1.08996 * 109.47305 * 300.00049 * 3 2 1 26 26 H 1.08998 * 110.23857 * 78.01832 * 5 4 3 27 27 H 1.09000 * 110.28306 * 316.00091 * 5 4 3 28 28 H 1.09002 * 110.96936 * 216.49131 * 6 5 4 29 29 H 1.09003 * 110.97019 * 92.76754 * 6 5 4 30 30 H 0.97003 * 119.99805 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.3337 1.4435 1.2115 6 6 5.7414 1.8784 0.7470 7 6 5.7296 1.4523 -0.7393 8 1 6.2722 2.1758 -1.3479 9 6 6.3265 0.0779 -0.8988 10 1 6.6868 -0.4581 -0.0332 11 6 6.4136 -0.4951 -2.1498 12 7 5.9752 0.1578 -3.2040 13 14 7.1542 -2.1985 -2.3476 14 1 6.0838 -3.2208 -2.2267 15 1 7.7946 -2.3079 -3.6828 16 1 8.1728 -2.4212 -1.2902 17 6 4.2630 1.4420 -1.1107 18 8 3.8338 1.4352 -2.2450 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 1.6767 1.9563 -0.8899 26 1 4.3712 0.4435 1.6435 27 1 3.9398 2.1545 1.9378 28 1 6.5160 1.3463 1.2992 29 1 5.8679 2.9568 0.8427 30 1 6.0368 -0.2451 -4.0842 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261323597.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:28 Heat of formation + Delta-G solvation = -45.310901 kcal Electronic energy + Delta-G solvation = -12961.951919 eV Core-core repulsion = 10756.804601 eV Total energy + Delta-G solvation = -2205.147318 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.07443 -35.04145 -34.37906 -32.53622 -30.26382 -26.92844 -25.58947 -23.87336 -21.45112 -20.28576 -18.31605 -16.71348 -15.58855 -14.81540 -14.58431 -14.41223 -13.66773 -13.20012 -12.58639 -12.51066 -12.02463 -11.70912 -11.62602 -11.48581 -11.01169 -10.90688 -10.88638 -10.52156 -10.45884 -10.27342 -9.52219 -9.18290 -8.51547 -8.01878 -7.62746 -5.92728 -4.05175 3.32584 3.39118 3.41019 4.04931 4.25324 4.48821 5.26043 5.34724 5.38183 5.57227 5.64813 5.68881 5.80288 5.99762 6.05304 6.10949 6.19242 6.27721 6.49092 6.61730 6.64701 6.73241 7.03389 7.49709 7.70894 7.89405 8.21082 8.40793 8.94787 9.57624 9.82280 11.10172 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.034162 B = 0.012684 C = 0.011187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.417422 B = 2207.050878 C = 2502.377862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.132 3.868 4 N -0.643 5.643 5 C 0.121 3.879 6 C -0.131 4.131 7 C 0.026 3.974 8 H 0.056 0.944 9 C -0.529 4.529 10 H 0.063 0.937 11 C 0.065 3.935 12 N -0.842 5.842 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.522 3.478 18 O -0.515 6.515 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 1.459 8.611 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.381 5.381 5 C -0.003 4.003 6 C -0.169 4.169 7 C 0.005 3.995 8 H 0.074 0.926 9 C -0.567 4.567 10 H 0.081 0.919 11 C -0.142 4.142 12 N -0.475 5.475 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.211 1.211 16 H -0.197 1.197 17 C 0.312 3.688 18 O -0.387 6.387 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.085 1.474 7.737 9.953 hybrid contribution 0.232 -1.138 -0.085 1.164 sum -5.853 0.337 7.653 9.640 Atomic orbital electron populations 1.21694 0.96006 1.01326 1.01377 1.21936 0.95099 0.98389 1.02697 1.21134 0.80786 0.95840 1.01343 1.48592 1.04377 1.76922 1.08193 1.21750 0.91714 0.99779 0.87064 1.22644 0.95213 0.99351 0.99697 1.19438 0.90165 0.99137 0.90793 0.92619 1.20706 1.41960 1.00667 0.93336 0.91873 1.25150 0.95103 0.97741 0.96242 1.70143 1.42106 1.36732 0.98537 0.86622 0.79317 0.84729 0.77539 1.20764 1.21113 1.19731 1.22116 0.90348 0.72931 0.83423 1.90579 1.78509 1.48481 1.21160 0.92763 0.92973 0.93085 0.91397 0.92230 0.92057 0.91154 0.92694 0.92907 0.90519 0.92612 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.14 -2.37 6.26 -26.73 -0.17 -2.53 16 3 C 0.13 2.32 5.93 -4.04 -0.02 2.30 16 4 N -0.64 -13.55 2.93 -172.37 -0.51 -14.06 16 5 C 0.12 2.16 7.35 -3.09 -0.02 2.13 16 6 C -0.13 -2.54 6.69 -25.10 -0.17 -2.71 16 7 C 0.03 0.67 2.80 -91.79 -0.26 0.41 16 8 H 0.06 1.54 8.14 -51.92 -0.42 1.12 16 9 C -0.53 -14.62 8.52 -34.44 -0.29 -14.92 16 10 H 0.06 1.67 7.59 -52.49 -0.40 1.27 16 11 C 0.06 1.87 5.35 -17.82 -0.10 1.77 16 12 N -0.84 -25.88 11.49 55.43 0.64 -25.24 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 C 0.52 13.70 7.04 -10.86 -0.08 13.63 16 18 O -0.51 -15.55 15.96 5.56 0.09 -15.46 16 19 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.41 7.75 -51.93 -0.40 1.00 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 254.09 15.07 3.83 3.83 Total: -1.00 -32.77 254.09 -6.28 -39.06 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -4.57 Total: -3.40 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.74 Total: -1.45 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.13 Total: -39.30 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.09 Total: -15.46 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.77 -6.28 -39.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323597.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.256 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds