Wall clock time and date at job start Mon Mar 30 2020 02:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 N 1.46504 * 109.46987 * 180.02562 * 3 2 1 5 5 C 1.46825 * 124.33333 * 269.93519 * 4 3 2 6 6 C 1.54481 * 105.44388 * 197.00180 * 5 4 3 7 7 C 1.54625 * 101.79703 * 334.62720 * 6 5 4 8 8 H 1.09010 * 110.48568 * 143.45878 * 7 6 5 9 9 C 1.50691 * 110.48972 * 265.96879 * 7 6 5 10 10 H 1.07997 * 119.99996 * 359.97438 * 9 7 6 11 11 C 1.37880 * 120.00506 * 180.02562 * 9 7 6 12 12 N 1.31518 * 119.99485 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 120.00482 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47279 * 89.99766 * 13 11 9 15 15 H 1.48492 * 109.47227 * 210.00108 * 13 11 9 16 16 H 1.48501 * 109.46880 * 330.00369 * 13 11 9 17 17 C 1.34414 * 124.34881 * 89.97619 * 4 3 2 18 18 O 1.21279 * 124.94846 * 359.62238 * 17 4 3 19 19 H 1.08996 * 109.46994 * 59.99760 * 1 2 3 20 20 H 1.09003 * 109.47124 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46414 * 299.99983 * 1 2 3 22 22 H 1.09005 * 109.46966 * 239.99864 * 2 1 3 23 23 H 1.09005 * 109.47221 * 120.00339 * 2 1 3 24 24 H 1.08991 * 109.46953 * 60.00486 * 3 2 1 25 25 H 1.08996 * 109.47305 * 300.00049 * 3 2 1 26 26 H 1.08998 * 110.23857 * 78.01832 * 5 4 3 27 27 H 1.09000 * 110.28306 * 316.00091 * 5 4 3 28 28 H 1.09002 * 110.96936 * 216.49131 * 6 5 4 29 29 H 1.09003 * 110.97019 * 92.76754 * 6 5 4 30 30 H 0.97003 * 119.99805 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.3337 1.4435 1.2115 6 6 5.7414 1.8784 0.7470 7 6 5.7296 1.4523 -0.7393 8 1 6.2722 2.1758 -1.3479 9 6 6.3265 0.0779 -0.8988 10 1 6.6868 -0.4581 -0.0332 11 6 6.4136 -0.4951 -2.1498 12 7 5.9752 0.1578 -3.2040 13 14 7.1542 -2.1985 -2.3476 14 1 6.0838 -3.2208 -2.2267 15 1 7.7946 -2.3079 -3.6828 16 1 8.1728 -2.4212 -1.2902 17 6 4.2630 1.4420 -1.1107 18 8 3.8338 1.4352 -2.2450 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 1.6767 1.9563 -0.8899 26 1 4.3712 0.4435 1.6435 27 1 3.9398 2.1545 1.9378 28 1 6.5160 1.3463 1.2992 29 1 5.8679 2.9568 0.8427 30 1 6.0368 -0.2451 -4.0842 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261323597.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:28 Heat of formation + Delta-G solvation = -67.245991 kcal Electronic energy + Delta-G solvation = -12962.903096 eV Core-core repulsion = 10756.804601 eV Total energy + Delta-G solvation = -2206.098495 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.88274 -36.94515 -35.98401 -34.46846 -31.92703 -28.74513 -27.08226 -25.79475 -22.80308 -21.98497 -20.14758 -18.72068 -17.33640 -16.60323 -16.23552 -16.20842 -15.29545 -14.60239 -14.42461 -14.29542 -13.78820 -13.40057 -13.08737 -12.94924 -12.85600 -12.53078 -12.41003 -12.27611 -12.03536 -11.64310 -11.50120 -11.11583 -10.67524 -10.05722 -9.31553 -8.09636 -6.28375 1.38075 1.39318 1.50409 2.21526 2.44245 2.49152 3.19571 3.92911 4.05505 4.13117 4.31196 4.39359 4.40754 4.62838 4.66821 4.78503 4.87646 4.95071 5.13661 5.20113 5.23328 5.38860 5.41012 5.46447 5.71646 6.11220 6.15238 6.50102 6.85885 7.38679 7.87421 8.93277 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.034162 B = 0.012684 C = 0.011187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.417422 B = 2207.050878 C = 2502.377862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.126 3.874 4 N -0.638 5.638 5 C 0.118 3.882 6 C -0.119 4.119 7 C 0.007 3.993 8 H 0.017 0.983 9 C -0.534 4.534 10 H 0.075 0.925 11 C 0.003 3.997 12 N -0.887 5.887 13 Si 0.959 3.041 14 H -0.283 1.283 15 H -0.286 1.286 16 H -0.252 1.252 17 C 0.509 3.491 18 O -0.571 6.571 19 H 0.049 0.951 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.018 0.982 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 1.034 11.657 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.004 3.996 4 N -0.374 5.374 5 C -0.004 4.004 6 C -0.157 4.157 7 C -0.014 4.014 8 H 0.035 0.965 9 C -0.572 4.572 10 H 0.093 0.907 11 C -0.200 4.200 12 N -0.523 5.523 13 Si 0.784 3.216 14 H -0.209 1.209 15 H -0.212 1.212 16 H -0.175 1.175 17 C 0.299 3.701 18 O -0.449 6.449 19 H 0.068 0.932 20 H 0.080 0.920 21 H 0.099 0.901 22 H 0.037 0.963 23 H 0.088 0.912 24 H 0.129 0.871 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.679 1.050 10.866 12.798 hybrid contribution 0.399 -0.947 -0.964 1.409 sum -6.280 0.103 9.902 11.726 Atomic orbital electron populations 1.21643 0.92883 1.02444 1.02630 1.21871 0.97813 0.97195 1.00746 1.21432 0.78554 0.96826 1.02750 1.48596 1.06048 1.74908 1.07819 1.22039 0.90200 1.01768 0.86348 1.22603 0.97019 1.01058 0.94993 1.19487 0.89698 0.97607 0.94653 0.96473 1.21171 1.41036 1.01511 0.93490 0.90661 1.26101 0.95747 1.01945 0.96157 1.70353 1.44348 1.38729 0.98839 0.85539 0.78698 0.79483 0.77880 1.20880 1.21186 1.17508 1.22191 0.91340 0.72753 0.83804 1.90529 1.79501 1.51232 1.23658 0.93197 0.92007 0.90107 0.96284 0.91167 0.87147 0.93088 0.91803 0.87865 0.89116 0.90275 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.91 71.98 0.71 -2.51 16 2 C -0.14 -4.37 6.26 30.59 0.19 -4.18 16 3 C 0.13 4.17 5.93 86.38 0.51 4.68 16 4 N -0.64 -25.93 2.93 -817.85 -2.40 -28.33 16 5 C 0.12 3.77 7.35 86.82 0.64 4.41 16 6 C -0.12 -4.32 6.69 31.65 0.21 -4.11 16 7 C 0.01 0.37 2.80 -11.55 -0.03 0.34 16 8 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 9 C -0.53 -29.70 8.52 25.60 0.22 -29.48 16 10 H 0.08 3.89 7.59 -2.91 -0.02 3.87 16 11 C 0.00 0.18 5.35 84.65 0.45 0.63 16 12 N -0.89 -57.03 11.49 21.45 0.25 -56.78 16 13 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 15 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 16 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 17 C 0.51 27.31 7.04 87.90 0.62 27.93 16 18 O -0.57 -36.33 15.96 -3.03 -0.05 -36.38 16 19 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 20 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 23 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 24 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.09 3.03 7.75 -2.39 -0.02 3.01 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -75.57 254.09 4.45 -71.12 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.10 Total: 5.34 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 3.52 Total: -2.28 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.15 Total: -85.11 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.05 Total: -36.38 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -75.57 4.45 -71.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323597.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.874 kcal (2) G-P(sol) polarization free energy of solvation -75.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds