Wall clock time and date at job start Mon Mar 30 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 N 1.46510 * 109.46647 * 179.97438 * 3 2 1 5 5 C 1.46760 * 124.34729 * 90.00137 * 4 3 2 6 6 C 1.54480 * 105.54782 * 162.95825 * 5 4 3 7 7 C 1.54861 * 101.66110 * 25.43666 * 6 5 4 8 8 H 1.08998 * 110.58352 * 216.45869 * 7 6 5 9 9 C 1.50702 * 110.49316 * 93.87813 * 7 6 5 10 10 H 1.07998 * 119.99511 * 3.75575 * 9 7 6 11 11 C 1.37870 * 120.00043 * 183.75581 * 9 7 6 12 12 N 1.31519 * 119.99870 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99989 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47032 * 59.99798 * 13 11 9 15 15 H 1.48506 * 109.47185 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47065 * 299.99547 * 13 11 9 17 17 C 1.34415 * 124.34968 * 270.02313 * 4 3 2 18 18 O 1.21288 * 124.94382 * 0.41055 * 17 4 3 19 19 H 1.09005 * 109.47198 * 60.00027 * 1 2 3 20 20 H 1.08997 * 109.47248 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47380 * 300.00061 * 1 2 3 22 22 H 1.08998 * 109.46952 * 239.99763 * 2 1 3 23 23 H 1.08997 * 109.46653 * 120.00597 * 2 1 3 24 24 H 1.08995 * 109.46937 * 60.00600 * 3 2 1 25 25 H 1.08996 * 109.47455 * 299.99554 * 3 2 1 26 26 H 1.09002 * 110.24740 * 282.00398 * 5 4 3 27 27 H 1.09002 * 110.24616 * 43.91923 * 5 4 3 28 28 H 1.08997 * 110.97017 * 143.57782 * 6 5 4 29 29 H 1.09000 * 110.97126 * 267.34164 * 6 5 4 30 30 H 0.97004 * 119.99699 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3336 1.4422 -1.2107 6 6 5.7419 1.8783 -0.7492 7 6 5.7295 1.4517 0.7394 8 1 6.2728 2.1734 1.3494 9 6 6.3230 0.0756 0.8988 10 1 6.7365 -0.4365 0.0425 11 6 6.3382 -0.5293 2.1376 12 7 5.8351 0.0947 3.1803 13 14 7.0744 -2.2347 2.3352 14 1 8.5034 -2.2066 1.9321 15 1 6.9692 -2.6578 3.7549 16 1 6.3365 -3.1950 1.4761 17 6 4.2630 1.4421 1.1107 18 8 3.8337 1.4347 2.2450 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9562 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 4.3710 0.4418 -1.6420 27 1 3.9386 2.1515 -1.9380 28 1 6.5158 1.3463 -1.3024 29 1 5.8673 2.9568 -0.8454 30 1 5.8461 -0.3308 4.0519 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261323598.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:30 Heat of formation + Delta-G solvation = -43.330328 kcal Electronic energy + Delta-G solvation = -12984.355345 eV Core-core repulsion = 10779.293910 eV Total energy + Delta-G solvation = -2205.061434 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.05251 -35.01236 -34.35564 -32.52453 -30.24433 -26.91967 -25.57382 -23.85465 -21.43965 -20.28169 -18.30500 -16.68505 -15.56561 -14.79270 -14.57657 -14.41004 -13.64856 -13.19016 -12.57213 -12.49866 -12.00471 -11.69904 -11.61285 -11.45193 -11.00282 -10.87979 -10.87319 -10.52495 -10.45068 -10.26237 -9.54937 -9.18709 -8.48047 -7.99260 -7.59857 -5.90045 -4.04042 3.33892 3.39268 3.40301 4.07053 4.28575 4.49641 5.27432 5.35691 5.39026 5.58425 5.65779 5.69785 5.81262 6.00821 6.06199 6.12021 6.20068 6.28465 6.49996 6.62448 6.65751 6.74467 7.03689 7.49616 7.73095 7.89903 8.21939 8.42876 8.94916 9.58442 9.85933 11.11126 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.033754 B = 0.012923 C = 0.011315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.342903 B = 2166.088228 C = 2474.048954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.133 3.867 4 N -0.643 5.643 5 C 0.121 3.879 6 C -0.131 4.131 7 C 0.027 3.973 8 H 0.053 0.947 9 C -0.531 4.531 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.839 5.839 13 Si 0.890 3.110 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.522 3.478 18 O -0.509 6.509 19 H 0.050 0.950 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.645 1.555 -8.504 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.010 3.990 4 N -0.381 5.381 5 C -0.003 4.003 6 C -0.169 4.169 7 C 0.005 3.995 8 H 0.071 0.929 9 C -0.569 4.569 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.472 5.472 13 Si 0.717 3.283 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.312 3.688 18 O -0.382 6.382 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.981 1.564 -7.623 9.815 hybrid contribution 0.247 -1.155 0.061 1.183 sum -5.735 0.409 -7.562 9.499 Atomic orbital electron populations 1.21695 0.96029 1.01310 1.01363 1.21933 0.95070 0.98415 1.02698 1.21126 0.80801 0.95815 1.01305 1.48577 1.04351 1.77032 1.08179 1.21722 0.91704 0.99748 0.87087 1.22673 0.95231 0.99292 0.99686 1.19471 0.90296 0.99009 0.90718 0.92896 1.20666 1.41020 1.00649 0.94532 0.91911 1.25159 0.95089 0.97810 0.96266 1.70173 1.40705 1.36836 0.99476 0.86703 0.79706 0.84756 0.77115 1.20078 1.21260 1.20334 1.22040 0.90233 0.73114 0.83441 1.90587 1.78414 1.48112 1.21060 0.93098 0.92989 0.92769 0.92252 0.91386 0.91168 0.92092 0.92740 0.92978 0.90565 0.92627 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.14 -2.38 6.26 -26.73 -0.17 -2.55 16 3 C 0.13 2.34 5.93 -4.04 -0.02 2.32 16 4 N -0.64 -13.62 2.93 -172.41 -0.51 -14.13 16 5 C 0.12 2.18 7.34 -3.12 -0.02 2.16 16 6 C -0.13 -2.54 6.71 -24.97 -0.17 -2.71 16 7 C 0.03 0.68 2.88 -91.66 -0.26 0.41 16 8 H 0.05 1.46 8.14 -51.93 -0.42 1.04 16 9 C -0.53 -14.69 8.57 -34.44 -0.30 -14.98 16 10 H 0.06 1.66 7.57 -52.49 -0.40 1.26 16 11 C 0.06 1.85 5.32 -17.82 -0.09 1.75 16 12 N -0.84 -25.81 11.14 55.43 0.62 -25.20 16 13 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.52 13.73 6.98 -10.86 -0.08 13.66 16 18 O -0.51 -15.40 15.65 5.55 0.09 -15.32 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 24 H 0.07 1.32 7.93 -51.93 -0.41 0.90 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.40 7.74 -51.93 -0.40 0.99 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 253.45 15.07 3.82 3.82 Total: -1.00 -32.71 253.45 -6.32 -39.03 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.57 Total: -3.47 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.74 Total: -1.49 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.11 Total: -39.33 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.71 -6.32 -39.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323598.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.299 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds