Wall clock time and date at job start Mon Mar 30 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 N 1.46510 * 109.46647 * 179.97438 * 3 2 1 5 5 C 1.46760 * 124.34729 * 90.00137 * 4 3 2 6 6 C 1.54480 * 105.54782 * 162.95825 * 5 4 3 7 7 C 1.54861 * 101.66110 * 25.43666 * 6 5 4 8 8 H 1.08998 * 110.58352 * 216.45869 * 7 6 5 9 9 C 1.50702 * 110.49316 * 93.87813 * 7 6 5 10 10 H 1.07998 * 119.99511 * 3.75575 * 9 7 6 11 11 C 1.37870 * 120.00043 * 183.75581 * 9 7 6 12 12 N 1.31519 * 119.99870 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99989 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47032 * 59.99798 * 13 11 9 15 15 H 1.48506 * 109.47185 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47065 * 299.99547 * 13 11 9 17 17 C 1.34415 * 124.34968 * 270.02313 * 4 3 2 18 18 O 1.21288 * 124.94382 * 0.41055 * 17 4 3 19 19 H 1.09005 * 109.47198 * 60.00027 * 1 2 3 20 20 H 1.08997 * 109.47248 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47380 * 300.00061 * 1 2 3 22 22 H 1.08998 * 109.46952 * 239.99763 * 2 1 3 23 23 H 1.08997 * 109.46653 * 120.00597 * 2 1 3 24 24 H 1.08995 * 109.46937 * 60.00600 * 3 2 1 25 25 H 1.08996 * 109.47455 * 299.99554 * 3 2 1 26 26 H 1.09002 * 110.24740 * 282.00398 * 5 4 3 27 27 H 1.09002 * 110.24616 * 43.91923 * 5 4 3 28 28 H 1.08997 * 110.97017 * 143.57782 * 6 5 4 29 29 H 1.09000 * 110.97126 * 267.34164 * 6 5 4 30 30 H 0.97004 * 119.99699 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3336 1.4422 -1.2107 6 6 5.7419 1.8783 -0.7492 7 6 5.7295 1.4517 0.7394 8 1 6.2728 2.1734 1.3494 9 6 6.3230 0.0756 0.8988 10 1 6.7365 -0.4365 0.0425 11 6 6.3382 -0.5293 2.1376 12 7 5.8351 0.0947 3.1803 13 14 7.0744 -2.2347 2.3352 14 1 8.5034 -2.2066 1.9321 15 1 6.9692 -2.6578 3.7549 16 1 6.3365 -3.1950 1.4761 17 6 4.2630 1.4421 1.1107 18 8 3.8337 1.4347 2.2450 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9562 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 4.3710 0.4418 -1.6420 27 1 3.9386 2.1515 -1.9380 28 1 6.5158 1.3463 -1.3024 29 1 5.8673 2.9568 -0.8454 30 1 5.8461 -0.3308 4.0519 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261323598.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:30 Heat of formation + Delta-G solvation = -65.159231 kcal Electronic energy + Delta-G solvation = -12985.301917 eV Core-core repulsion = 10779.293910 eV Total energy + Delta-G solvation = -2206.008006 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86258 -36.91260 -35.97047 -34.46052 -31.91241 -28.74035 -27.07026 -25.78008 -22.80013 -21.98450 -20.14128 -18.68933 -17.31602 -16.59076 -16.23935 -16.19544 -15.28386 -14.59612 -14.41839 -14.27813 -13.76403 -13.39402 -13.07205 -12.94359 -12.78936 -12.54118 -12.42825 -12.28392 -12.04006 -11.64337 -11.52614 -11.12282 -10.63580 -10.02727 -9.29339 -8.07100 -6.27450 1.38000 1.41102 1.48617 2.24545 2.44780 2.51096 3.19946 3.93160 4.06205 4.13536 4.31237 4.39561 4.41038 4.62985 4.67163 4.78877 4.87945 4.95480 5.13783 5.20521 5.23563 5.39026 5.40596 5.46751 5.71787 6.12645 6.16064 6.51466 6.86256 7.39300 7.90911 8.93660 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.033754 B = 0.012923 C = 0.011315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.342903 B = 2166.088228 C = 2474.048954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.127 3.873 4 N -0.639 5.639 5 C 0.119 3.881 6 C -0.119 4.119 7 C 0.007 3.993 8 H 0.016 0.984 9 C -0.537 4.537 10 H 0.075 0.925 11 C 0.003 3.997 12 N -0.883 5.883 13 Si 0.958 3.042 14 H -0.258 1.258 15 H -0.292 1.292 16 H -0.270 1.270 17 C 0.509 3.491 18 O -0.566 6.566 19 H 0.080 0.920 20 H 0.061 0.939 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.018 0.982 24 H 0.051 0.949 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 1.156 -11.519 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.005 3.995 4 N -0.375 5.375 5 C -0.003 4.003 6 C -0.156 4.156 7 C -0.015 4.015 8 H 0.034 0.966 9 C -0.575 4.575 10 H 0.093 0.907 11 C -0.200 4.200 12 N -0.518 5.518 13 Si 0.783 3.217 14 H -0.183 1.183 15 H -0.218 1.218 16 H -0.195 1.195 17 C 0.299 3.701 18 O -0.443 6.443 19 H 0.099 0.901 20 H 0.080 0.920 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.037 0.963 24 H 0.069 0.931 25 H 0.128 0.872 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.544 1.165 -10.720 12.614 hybrid contribution 0.411 -0.971 0.932 1.407 sum -6.134 0.194 -9.788 11.552 Atomic orbital electron populations 1.21643 0.92882 1.02432 1.02629 1.21867 0.97805 0.97237 1.00702 1.21422 0.78592 0.96774 1.02711 1.48581 1.06013 1.75070 1.07818 1.22006 0.90267 1.01670 0.86394 1.22634 0.96981 1.01026 0.94974 1.19528 0.89825 0.97504 0.94603 0.96643 1.21136 1.40163 1.01493 0.94662 0.90686 1.26101 0.95676 1.02043 0.96170 1.70395 1.42964 1.38720 0.99759 0.85617 0.79642 0.79738 0.76728 1.18259 1.21814 1.19514 1.22127 0.91229 0.72914 0.83824 1.90538 1.79402 1.50828 1.23535 0.90110 0.92024 0.93187 0.91244 0.96304 0.93087 0.87195 0.91956 0.87943 0.89141 0.90246 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.53 16 2 C -0.14 -4.41 6.26 30.59 0.19 -4.22 16 3 C 0.13 4.22 5.93 86.38 0.51 4.74 16 4 N -0.64 -26.11 2.93 -817.98 -2.40 -28.51 16 5 C 0.12 3.82 7.34 86.83 0.64 4.45 16 6 C -0.12 -4.31 6.71 31.73 0.21 -4.09 16 7 C 0.01 0.37 2.88 -11.47 -0.03 0.33 16 8 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 9 C -0.54 -29.86 8.57 25.60 0.22 -29.64 16 10 H 0.08 3.87 7.57 -2.91 -0.02 3.85 16 11 C 0.00 0.17 5.32 84.65 0.45 0.62 16 12 N -0.88 -56.83 11.14 21.45 0.24 -56.59 16 13 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 14 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 C 0.51 27.38 6.98 87.90 0.61 27.99 16 18 O -0.57 -35.99 15.65 -3.06 -0.05 -36.04 16 19 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 25 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.10 2.36 8.14 -2.39 -0.02 2.35 16 28 H 0.09 3.02 7.74 -2.39 -0.02 3.01 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -75.32 253.45 4.43 -70.89 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.10 Total: 5.29 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 3.52 Total: -2.35 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.16 Total: -85.10 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.05 Total: -36.04 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -75.32 4.43 -70.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323598.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.729 kcal (2) G-P(sol) polarization free energy of solvation -75.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds