Wall clock time and date at job start Mon Mar 30 2020 02:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47218 * 2 1 4 4 N 1.46500 * 109.47202 * 119.99887 * 2 1 3 5 5 C 1.46761 * 124.34883 * 119.99536 * 4 2 1 6 6 C 1.54480 * 105.47309 * 162.96461 * 5 4 2 7 7 C 1.54627 * 101.76377 * 25.41862 * 6 5 4 8 8 H 1.09002 * 110.48752 * 93.87985 * 7 6 5 9 9 C 1.50701 * 110.59756 * 216.47028 * 7 6 5 10 10 H 1.07999 * 120.00113 * 358.07802 * 9 7 6 11 11 C 1.37874 * 119.99759 * 178.08266 * 9 7 6 12 12 N 1.31510 * 120.00405 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99947 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47044 * 89.99977 * 13 11 9 15 15 H 1.48499 * 109.47174 * 210.00412 * 13 11 9 16 16 H 1.48507 * 109.47155 * 330.00249 * 13 11 9 17 17 C 1.34415 * 124.34832 * 299.97997 * 4 2 1 18 18 O 1.21281 * 124.94347 * 0.38518 * 17 4 2 19 19 H 1.08999 * 109.46662 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46630 * 300.00021 * 1 2 3 21 21 H 1.08999 * 109.46893 * 60.00085 * 1 2 3 22 22 H 1.09000 * 109.46630 * 239.99978 * 2 1 3 23 23 H 1.08994 * 109.47066 * 180.02562 * 3 2 1 24 24 H 1.09008 * 109.47031 * 300.00020 * 3 2 1 25 25 H 1.09000 * 109.47417 * 59.99861 * 3 2 1 26 26 H 1.09005 * 110.25171 * 281.96701 * 5 4 2 27 27 H 1.09002 * 110.24729 * 43.87459 * 5 4 2 28 28 H 1.09003 * 110.96852 * 267.29846 * 6 5 4 29 29 H 1.09001 * 110.96964 * 143.53833 * 6 5 4 30 30 H 0.97002 * 120.00680 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8656 -1.8888 1.1727 6 6 3.4728 -1.9920 2.5894 7 6 2.4211 -1.2412 3.4387 8 1 1.6976 -1.9414 3.8564 9 6 3.0895 -0.4567 4.5382 10 1 4.1617 -0.5024 4.6592 11 6 2.3321 0.3192 5.3898 12 7 1.0264 0.3744 5.2429 13 14 3.1604 1.2911 6.7532 14 1 3.5245 2.6396 6.2490 15 1 2.2282 1.4268 7.9011 16 1 4.3873 0.5794 7.1934 17 6 1.7484 -0.3080 2.4561 18 8 1.0656 0.6468 2.7609 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 2.2645 -2.7716 0.9548 27 1 3.6552 -1.7780 0.4296 28 1 4.4407 -1.4927 2.6363 29 1 3.5568 -3.0325 2.9030 30 1 0.4934 0.9200 5.8423 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261326149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:32 Heat of formation + Delta-G solvation = -34.906007 kcal Electronic energy + Delta-G solvation = -13194.277428 eV Core-core repulsion = 10989.581300 eV Total energy + Delta-G solvation = -2204.696128 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.20055 -34.92220 -34.42555 -32.26035 -29.09921 -26.79117 -26.69309 -23.95379 -21.56452 -20.41547 -17.79981 -16.27837 -15.76668 -14.98135 -14.33426 -14.19994 -13.16370 -12.81597 -12.68914 -12.44969 -12.01694 -11.85517 -11.50744 -11.47079 -11.00251 -10.80530 -10.71652 -10.57888 -10.46426 -10.22092 -9.42904 -9.10913 -8.34481 -7.88918 -7.61404 -5.85447 -3.93166 3.38336 3.44721 3.46185 3.99854 4.30444 4.55684 5.26790 5.47629 5.55838 5.60002 5.68658 5.83714 5.97206 6.02317 6.09766 6.15944 6.33183 6.35965 6.58924 6.70727 6.77747 6.79886 7.00221 7.56635 7.74559 7.97192 8.24545 8.50630 9.02176 9.68601 9.92548 11.19737 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043963 B = 0.012871 C = 0.011386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.750367 B = 2174.916818 C = 2458.650693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.164 4.164 4 N -0.646 5.646 5 C 0.112 3.888 6 C -0.128 4.128 7 C 0.025 3.975 8 H 0.056 0.944 9 C -0.536 4.536 10 H 0.060 0.940 11 C 0.074 3.926 12 N -0.838 5.838 13 Si 0.889 3.111 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.519 3.481 18 O -0.491 6.491 19 H 0.049 0.951 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -3.109 -9.219 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 C -0.222 4.222 4 N -0.386 5.386 5 C -0.012 4.012 6 C -0.166 4.166 7 C 0.004 3.996 8 H 0.074 0.926 9 C -0.574 4.574 10 H 0.078 0.922 11 C -0.134 4.134 12 N -0.471 5.471 13 Si 0.717 3.283 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.199 1.199 17 C 0.308 3.692 18 O -0.361 6.361 19 H 0.068 0.932 20 H 0.093 0.907 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.503 -2.448 -9.005 9.452 hybrid contribution 0.429 0.546 0.551 0.887 sum 1.933 -1.901 -8.453 8.877 Atomic orbital electron populations 1.22152 0.95817 1.01639 1.02574 1.20642 0.93790 0.92772 0.87591 1.22147 1.00821 0.96733 1.02483 1.48935 1.53870 1.29530 1.06264 1.21840 0.93024 0.87530 0.98778 1.22644 1.00039 1.00571 0.93339 1.19421 0.93680 0.93988 0.92508 0.92635 1.20682 0.93249 1.30269 1.13172 0.92199 1.25012 0.94798 0.96297 0.97252 1.70071 1.04334 1.37302 1.35432 0.86658 0.79280 0.80622 0.81747 1.20784 1.21269 1.19926 1.22206 0.79146 0.86029 0.81820 1.90577 1.37285 1.27993 1.80290 0.93153 0.90719 0.92787 0.91303 0.93055 0.92838 0.90767 0.93220 0.92734 0.91282 0.91529 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.20 37.16 0.34 -2.43 16 2 C 0.16 2.69 3.47 -67.93 -0.24 2.46 16 3 C -0.16 -2.83 9.20 37.16 0.34 -2.49 16 4 N -0.65 -13.23 2.83 -164.84 -0.47 -13.69 16 5 C 0.11 1.93 7.30 -3.12 -0.02 1.90 16 6 C -0.13 -2.49 6.69 -25.10 -0.17 -2.66 16 7 C 0.03 0.65 2.84 -91.78 -0.26 0.39 16 8 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 9 C -0.54 -15.10 8.53 -34.44 -0.29 -15.40 16 10 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 11 C 0.07 2.15 5.13 -17.82 -0.09 2.06 16 12 N -0.84 -25.67 11.01 55.43 0.61 -25.06 16 13 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.52 13.31 6.75 -10.86 -0.07 13.23 16 18 O -0.49 -14.36 12.43 5.56 0.07 -14.29 16 19 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 20 H 0.07 1.53 6.78 -51.93 -0.35 1.18 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 25 H 0.07 1.56 6.80 -51.93 -0.35 1.21 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.35 7.79 -51.93 -0.40 0.94 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 246.74 15.07 3.72 3.72 Total: -1.00 -32.24 246.74 -6.00 -38.24 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -4.45 Total: -3.09 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.46 Total: -2.94 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.14 Total: -38.75 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.07 Total: -14.29 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.24 -6.00 -38.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261326149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.330 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds