Wall clock time and date at job start Mon Mar 30 2020 02:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47218 * 2 1 4 4 N 1.46500 * 109.47202 * 119.99887 * 2 1 3 5 5 C 1.46761 * 124.34883 * 119.99536 * 4 2 1 6 6 C 1.54480 * 105.47309 * 162.96461 * 5 4 2 7 7 C 1.54627 * 101.76377 * 25.41862 * 6 5 4 8 8 H 1.09002 * 110.48752 * 93.87985 * 7 6 5 9 9 C 1.50701 * 110.59756 * 216.47028 * 7 6 5 10 10 H 1.07999 * 120.00113 * 358.07802 * 9 7 6 11 11 C 1.37874 * 119.99759 * 178.08266 * 9 7 6 12 12 N 1.31510 * 120.00405 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99947 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47044 * 89.99977 * 13 11 9 15 15 H 1.48499 * 109.47174 * 210.00412 * 13 11 9 16 16 H 1.48507 * 109.47155 * 330.00249 * 13 11 9 17 17 C 1.34415 * 124.34832 * 299.97997 * 4 2 1 18 18 O 1.21281 * 124.94347 * 0.38518 * 17 4 2 19 19 H 1.08999 * 109.46662 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46630 * 300.00021 * 1 2 3 21 21 H 1.08999 * 109.46893 * 60.00085 * 1 2 3 22 22 H 1.09000 * 109.46630 * 239.99978 * 2 1 3 23 23 H 1.08994 * 109.47066 * 180.02562 * 3 2 1 24 24 H 1.09008 * 109.47031 * 300.00020 * 3 2 1 25 25 H 1.09000 * 109.47417 * 59.99861 * 3 2 1 26 26 H 1.09005 * 110.25171 * 281.96701 * 5 4 2 27 27 H 1.09002 * 110.24729 * 43.87459 * 5 4 2 28 28 H 1.09003 * 110.96852 * 267.29846 * 6 5 4 29 29 H 1.09001 * 110.96964 * 143.53833 * 6 5 4 30 30 H 0.97002 * 120.00680 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8656 -1.8888 1.1727 6 6 3.4728 -1.9920 2.5894 7 6 2.4211 -1.2412 3.4387 8 1 1.6976 -1.9414 3.8564 9 6 3.0895 -0.4567 4.5382 10 1 4.1617 -0.5024 4.6592 11 6 2.3321 0.3192 5.3898 12 7 1.0264 0.3744 5.2429 13 14 3.1604 1.2911 6.7532 14 1 3.5245 2.6396 6.2490 15 1 2.2282 1.4268 7.9011 16 1 4.3873 0.5794 7.1934 17 6 1.7484 -0.3080 2.4561 18 8 1.0656 0.6468 2.7609 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 2.2645 -2.7716 0.9548 27 1 3.6552 -1.7780 0.4296 28 1 4.4407 -1.4927 2.6363 29 1 3.5568 -3.0325 2.9030 30 1 0.4934 0.9200 5.8423 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261326149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:31 Heat of formation + Delta-G solvation = -56.427262 kcal Electronic energy + Delta-G solvation = -13195.210660 eV Core-core repulsion = 10989.581300 eV Total energy + Delta-G solvation = -2205.629360 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.92869 -36.76093 -36.08651 -34.26653 -30.85726 -28.54121 -28.05396 -25.94577 -23.07163 -22.12060 -19.59442 -18.30886 -17.36406 -16.75848 -16.28100 -15.77820 -14.72033 -14.49657 -14.32030 -14.16288 -13.90140 -13.58571 -13.16339 -12.88901 -12.78818 -12.48166 -12.37347 -12.20601 -11.99182 -11.95010 -11.34179 -11.09262 -10.54582 -9.81776 -9.24198 -8.04074 -6.17309 1.38614 1.40846 1.50475 2.32024 2.49923 2.50800 3.28194 3.91659 4.11091 4.21654 4.37622 4.41667 4.44541 4.71608 4.74748 4.76593 4.94903 4.95265 4.99018 5.12451 5.32852 5.38574 5.41453 5.60806 5.78188 6.19932 6.23302 6.61121 6.93076 7.47807 8.04878 9.00573 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043963 B = 0.012871 C = 0.011386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.750367 B = 2174.916818 C = 2458.650693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 C -0.158 4.158 4 N -0.642 5.642 5 C 0.112 3.888 6 C -0.118 4.118 7 C 0.005 3.995 8 H 0.026 0.974 9 C -0.549 4.549 10 H 0.063 0.937 11 C 0.016 3.984 12 N -0.876 5.876 13 Si 0.953 3.047 14 H -0.285 1.285 15 H -0.284 1.284 16 H -0.257 1.257 17 C 0.508 3.492 18 O -0.541 6.541 19 H 0.055 0.945 20 H 0.026 0.974 21 H 0.088 0.912 22 H 0.118 0.882 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.665 -4.007 -11.239 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 C -0.217 4.217 4 N -0.380 5.380 5 C -0.011 4.011 6 C -0.155 4.155 7 C -0.017 4.017 8 H 0.044 0.956 9 C -0.587 4.587 10 H 0.082 0.918 11 C -0.187 4.187 12 N -0.511 5.511 13 Si 0.778 3.222 14 H -0.212 1.212 15 H -0.209 1.209 16 H -0.180 1.180 17 C 0.297 3.703 18 O -0.416 6.416 19 H 0.074 0.926 20 H 0.046 0.954 21 H 0.107 0.893 22 H 0.135 0.865 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.088 -3.390 -11.065 11.978 hybrid contribution -0.045 0.775 1.104 1.350 sum 3.043 -2.615 -9.961 10.738 Atomic orbital electron populations 1.22095 0.95825 1.01779 1.01915 1.21014 0.93923 0.92917 0.87616 1.22095 1.00914 0.96817 1.01824 1.48886 1.53311 1.30169 1.05636 1.22112 0.93881 0.87002 0.98073 1.22575 0.98113 1.01110 0.93728 1.19477 0.94885 0.94075 0.93214 0.95628 1.21140 0.93529 1.30029 1.13972 0.91835 1.25881 0.95346 0.97633 0.99854 1.70253 1.05881 1.38452 1.36513 0.85651 0.78847 0.78831 0.78836 1.21187 1.20950 1.18036 1.22116 0.78877 0.85452 0.83869 1.90545 1.39357 1.30005 1.81684 0.92597 0.95446 0.89310 0.86455 0.92746 0.89299 0.95566 0.90597 0.88697 0.91304 0.88991 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 9.20 71.98 0.66 -4.42 16 2 C 0.15 4.66 3.47 44.99 0.16 4.82 16 3 C -0.16 -5.19 9.20 71.98 0.66 -4.53 16 4 N -0.64 -25.08 2.83 -794.03 -2.25 -27.32 16 5 C 0.11 3.39 7.30 86.83 0.63 4.02 16 6 C -0.12 -4.32 6.69 31.65 0.21 -4.11 16 7 C 0.01 0.26 2.84 -11.55 -0.03 0.23 16 8 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 9 C -0.55 -31.43 8.53 25.60 0.22 -31.21 16 10 H 0.06 3.47 7.62 -2.91 -0.02 3.45 16 11 C 0.02 0.98 5.13 84.65 0.43 1.41 16 12 N -0.88 -56.01 11.01 21.45 0.24 -55.77 16 13 Si 0.95 46.40 29.54 68.60 2.03 48.43 16 14 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 15 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 16 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 17 C 0.51 26.49 6.75 87.90 0.59 27.08 16 18 O -0.54 -33.15 12.43 -3.03 -0.04 -33.19 16 19 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 20 H 0.03 1.13 6.78 -2.39 -0.02 1.11 16 21 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 22 H 0.12 2.69 8.07 -2.39 -0.02 2.67 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.09 2.23 8.14 -2.38 -0.02 2.22 16 25 H 0.03 1.10 6.80 -2.39 -0.02 1.08 16 26 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.07 2.52 7.79 -2.39 -0.02 2.50 16 29 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -74.32 246.74 4.62 -69.70 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.10 Total: 4.86 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 3.54 Total: -6.71 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.01 Total: -83.10 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.04 Total: -33.19 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.32 4.62 -69.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261326149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.276 kcal (2) G-P(sol) polarization free energy of solvation -74.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds