Wall clock time and date at job start Mon Mar 30 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47239 * 2 1 4 4 N 1.46496 * 109.47511 * 120.00208 * 2 1 3 5 5 C 1.46773 * 124.34864 * 119.99768 * 4 2 1 6 6 C 1.54475 * 105.46985 * 197.01855 * 5 4 2 7 7 C 1.54626 * 101.77003 * 334.58197 * 6 5 4 8 8 H 1.09002 * 110.48835 * 266.12209 * 7 6 5 9 9 C 1.50701 * 110.48491 * 143.60798 * 7 6 5 10 10 H 1.07999 * 120.00167 * 1.84855 * 9 7 6 11 11 C 1.37881 * 119.99933 * 181.84308 * 9 7 6 12 12 N 1.31515 * 119.99983 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00188 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46717 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47263 * 119.99879 * 13 11 9 16 16 H 1.48494 * 109.47314 * 240.00191 * 13 11 9 17 17 C 1.34419 * 124.35126 * 299.99847 * 4 2 1 18 18 O 1.21277 * 124.93871 * 359.64112 * 17 4 2 19 19 H 1.08997 * 109.46858 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46786 * 299.99709 * 1 2 3 21 21 H 1.09001 * 109.47618 * 59.99382 * 1 2 3 22 22 H 1.09002 * 109.47288 * 240.00388 * 2 1 3 23 23 H 1.09001 * 109.47107 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47090 * 300.00306 * 3 2 1 25 25 H 1.09002 * 109.46663 * 60.00006 * 3 2 1 26 26 H 1.08999 * 110.24034 * 78.02063 * 5 4 2 27 27 H 1.08996 * 110.24597 * 316.01905 * 5 4 2 28 28 H 1.09005 * 110.96645 * 216.46691 * 6 5 4 29 29 H 1.08999 * 111.00282 * 92.72178 * 6 5 4 30 30 H 0.97000 * 120.00271 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8657 -1.8889 1.1725 6 6 2.7610 -2.4954 2.5893 7 6 2.4041 -1.2535 3.4386 8 1 3.3055 -0.8048 3.8558 9 6 1.4436 -1.6252 4.5387 10 1 1.1304 -2.6518 4.6582 11 6 0.9647 -0.6545 5.3929 12 7 1.3458 0.5958 5.2472 13 14 -0.2253 -1.1153 6.7570 14 1 -0.4946 -2.5748 6.7069 15 1 0.3698 -0.7661 8.0720 16 1 -1.4976 -0.3712 6.5763 17 6 1.7481 -0.3084 2.4561 18 8 1.0755 0.6536 2.7610 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.8982 -1.6164 0.9542 27 1 2.4967 -2.5972 0.4308 28 1 3.7142 -2.9213 2.9027 29 1 1.9680 -3.2418 2.6372 30 1 1.0086 1.2787 5.8479 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261326150.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:33 Heat of formation + Delta-G solvation = -35.063340 kcal Electronic energy + Delta-G solvation = -13192.822861 eV Core-core repulsion = 10988.119910 eV Total energy + Delta-G solvation = -2204.702951 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.20168 -34.92400 -34.42836 -32.26181 -29.10153 -26.79130 -26.69390 -23.95603 -21.56548 -20.41680 -17.80218 -16.28099 -15.76780 -14.98357 -14.33452 -14.19906 -13.16480 -12.81706 -12.69424 -12.45372 -12.01968 -11.85420 -11.50975 -11.47196 -11.00274 -10.82319 -10.71818 -10.57882 -10.44631 -10.21475 -9.43308 -9.10148 -8.35058 -7.89162 -7.61611 -5.85825 -3.93393 3.36923 3.44848 3.47413 3.99693 4.30173 4.55573 5.26660 5.47358 5.55814 5.59860 5.68566 5.83804 5.97174 6.02259 6.09697 6.15839 6.33119 6.35858 6.58888 6.70706 6.77661 6.79807 7.00218 7.56573 7.74429 7.97239 8.24456 8.50392 9.02289 9.68436 9.92253 11.19434 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043998 B = 0.012857 C = 0.011377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.246733 B = 2177.195105 C = 2460.482181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.164 4.164 4 N -0.646 5.646 5 C 0.112 3.888 6 C -0.128 4.128 7 C 0.025 3.975 8 H 0.056 0.944 9 C -0.535 4.535 10 H 0.060 0.940 11 C 0.074 3.926 12 N -0.838 5.838 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.519 3.481 18 O -0.491 6.491 19 H 0.050 0.950 20 H 0.073 0.927 21 H 0.053 0.947 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -3.046 -9.237 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 C -0.222 4.222 4 N -0.386 5.386 5 C -0.012 4.012 6 C -0.166 4.166 7 C 0.004 3.996 8 H 0.074 0.926 9 C -0.573 4.573 10 H 0.079 0.921 11 C -0.134 4.134 12 N -0.471 5.471 13 Si 0.717 3.283 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 C 0.308 3.692 18 O -0.362 6.362 19 H 0.070 0.930 20 H 0.092 0.908 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.800 -2.249 -9.027 9.475 hybrid contribution -0.646 -0.215 0.561 0.882 sum 1.154 -2.464 -8.465 8.892 Atomic orbital electron populations 1.22147 0.95795 1.01761 1.02486 1.20641 0.93836 0.92725 0.87590 1.22152 1.00676 0.96779 1.02575 1.48936 1.53387 1.30014 1.06261 1.21842 0.93577 0.86964 0.98794 1.22646 1.01203 0.99417 0.93340 1.19425 0.97593 0.90088 0.92524 0.92634 1.20725 1.29160 0.94431 1.12970 0.92136 1.25021 0.96172 0.94932 0.97275 1.70084 1.41738 1.00037 1.35287 0.86601 0.81250 0.78503 0.81985 1.19808 1.21052 1.21106 1.22200 0.79953 0.85212 0.81826 1.90577 1.37438 1.27852 1.80297 0.93049 0.90773 0.92828 0.91299 0.93154 0.92791 0.90716 0.93201 0.92726 0.91537 0.91275 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.20 37.16 0.34 -2.49 16 2 C 0.16 2.69 3.47 -67.93 -0.24 2.45 16 3 C -0.16 -2.77 9.20 37.16 0.34 -2.43 16 4 N -0.65 -13.22 2.83 -164.84 -0.47 -13.68 16 5 C 0.11 1.92 7.30 -3.12 -0.02 1.90 16 6 C -0.13 -2.50 6.68 -25.10 -0.17 -2.66 16 7 C 0.03 0.64 2.84 -91.78 -0.26 0.38 16 8 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 9 C -0.53 -15.07 8.53 -34.44 -0.29 -15.37 16 10 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 11 C 0.07 2.14 5.14 -17.82 -0.09 2.05 16 12 N -0.84 -25.66 11.02 55.43 0.61 -25.05 16 13 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 17 C 0.52 13.30 6.76 -10.86 -0.07 13.23 16 18 O -0.49 -14.36 12.45 5.56 0.07 -14.29 16 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.07 1.56 6.80 -51.93 -0.35 1.20 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.54 6.78 -51.93 -0.35 1.18 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 1.35 7.78 -51.93 -0.40 0.94 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 246.76 15.07 3.72 3.72 Total: -1.00 -32.26 246.76 -6.00 -38.26 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.44 Total: -3.11 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.46 Total: -2.93 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.14 Total: -38.74 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.07 Total: -14.29 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.26 -6.00 -38.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261326150.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.197 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds