Wall clock time and date at job start Mon Mar 30 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47239 * 2 1 4 4 N 1.46496 * 109.47511 * 120.00208 * 2 1 3 5 5 C 1.46773 * 124.34864 * 119.99768 * 4 2 1 6 6 C 1.54475 * 105.46985 * 197.01855 * 5 4 2 7 7 C 1.54626 * 101.77003 * 334.58197 * 6 5 4 8 8 H 1.09002 * 110.48835 * 266.12209 * 7 6 5 9 9 C 1.50701 * 110.48491 * 143.60798 * 7 6 5 10 10 H 1.07999 * 120.00167 * 1.84855 * 9 7 6 11 11 C 1.37881 * 119.99933 * 181.84308 * 9 7 6 12 12 N 1.31515 * 119.99983 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00188 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46717 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47263 * 119.99879 * 13 11 9 16 16 H 1.48494 * 109.47314 * 240.00191 * 13 11 9 17 17 C 1.34419 * 124.35126 * 299.99847 * 4 2 1 18 18 O 1.21277 * 124.93871 * 359.64112 * 17 4 2 19 19 H 1.08997 * 109.46858 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46786 * 299.99709 * 1 2 3 21 21 H 1.09001 * 109.47618 * 59.99382 * 1 2 3 22 22 H 1.09002 * 109.47288 * 240.00388 * 2 1 3 23 23 H 1.09001 * 109.47107 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47090 * 300.00306 * 3 2 1 25 25 H 1.09002 * 109.46663 * 60.00006 * 3 2 1 26 26 H 1.08999 * 110.24034 * 78.02063 * 5 4 2 27 27 H 1.08996 * 110.24597 * 316.01905 * 5 4 2 28 28 H 1.09005 * 110.96645 * 216.46691 * 6 5 4 29 29 H 1.08999 * 111.00282 * 92.72178 * 6 5 4 30 30 H 0.97000 * 120.00271 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8657 -1.8889 1.1725 6 6 2.7610 -2.4954 2.5893 7 6 2.4041 -1.2535 3.4386 8 1 3.3055 -0.8048 3.8558 9 6 1.4436 -1.6252 4.5387 10 1 1.1304 -2.6518 4.6582 11 6 0.9647 -0.6545 5.3929 12 7 1.3458 0.5958 5.2472 13 14 -0.2253 -1.1153 6.7570 14 1 -0.4946 -2.5748 6.7069 15 1 0.3698 -0.7661 8.0720 16 1 -1.4976 -0.3712 6.5763 17 6 1.7481 -0.3084 2.4561 18 8 1.0755 0.6536 2.7610 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.8982 -1.6164 0.9542 27 1 2.4967 -2.5972 0.4308 28 1 3.7142 -2.9213 2.9027 29 1 1.9680 -3.2418 2.6372 30 1 1.0086 1.2787 5.8479 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261326150.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:33 Heat of formation + Delta-G solvation = -56.609553 kcal Electronic energy + Delta-G solvation = -13193.757175 eV Core-core repulsion = 10988.119910 eV Total energy + Delta-G solvation = -2205.637265 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.92937 -36.76278 -36.08844 -34.26769 -30.85920 -28.54093 -28.05342 -25.94836 -23.07215 -22.12122 -19.59648 -18.31196 -17.36479 -16.75926 -16.28000 -15.77904 -14.72132 -14.50468 -14.32137 -14.16481 -13.89846 -13.58639 -13.16890 -12.88868 -12.79680 -12.48455 -12.36520 -12.20165 -11.99229 -11.94268 -11.34609 -11.08722 -10.55104 -9.81981 -9.24330 -8.04442 -6.17538 1.37949 1.40351 1.51331 2.31744 2.49765 2.50745 3.27887 3.91655 4.11007 4.21728 4.37684 4.41803 4.44477 4.71606 4.74795 4.76609 4.94965 4.95306 4.98954 5.12500 5.32905 5.38605 5.41502 5.60830 5.78247 6.19874 6.23224 6.61086 6.93055 7.47631 8.04657 9.00424 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043998 B = 0.012857 C = 0.011377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.246733 B = 2177.195105 C = 2460.482181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 C -0.158 4.158 4 N -0.642 5.642 5 C 0.112 3.888 6 C -0.118 4.118 7 C 0.005 3.995 8 H 0.026 0.974 9 C -0.547 4.547 10 H 0.064 0.936 11 C 0.016 3.984 12 N -0.876 5.876 13 Si 0.953 3.047 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.292 1.292 17 C 0.508 3.492 18 O -0.541 6.541 19 H 0.054 0.946 20 H 0.025 0.975 21 H 0.088 0.912 22 H 0.118 0.882 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.026 0.974 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -4.807 -11.266 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 C -0.216 4.216 4 N -0.380 5.380 5 C -0.011 4.011 6 C -0.155 4.155 7 C -0.017 4.017 8 H 0.044 0.956 9 C -0.585 4.585 10 H 0.082 0.918 11 C -0.188 4.188 12 N -0.511 5.511 13 Si 0.779 3.221 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.219 1.219 17 C 0.297 3.703 18 O -0.416 6.416 19 H 0.073 0.927 20 H 0.044 0.956 21 H 0.107 0.893 22 H 0.135 0.865 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.161 -4.062 -11.096 12.012 hybrid contribution -0.703 0.312 1.119 1.357 sum 1.458 -3.751 -9.978 10.758 Atomic orbital electron populations 1.22096 0.96008 1.01721 1.01827 1.21014 0.93792 0.93050 0.87614 1.22095 1.00948 0.96662 1.01914 1.48887 1.52774 1.30703 1.05631 1.22114 0.94696 0.86176 0.98077 1.22577 1.02382 0.96841 0.93737 1.19479 0.95916 0.93056 0.93232 0.95622 1.21172 1.29162 0.94433 1.13768 0.91826 1.25889 0.98089 0.94899 0.99879 1.70263 1.43400 1.01074 1.36402 0.85593 0.78534 0.78758 0.79263 1.18208 1.20145 1.21873 1.22109 0.79648 0.84666 0.83874 1.90544 1.39645 1.29738 1.81690 0.92734 0.95568 0.89294 0.86452 0.92594 0.89317 0.95445 0.90575 0.88693 0.88997 0.91315 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.20 71.98 0.66 -4.52 16 2 C 0.15 4.66 3.47 44.99 0.16 4.81 16 3 C -0.16 -5.08 9.20 71.98 0.66 -4.42 16 4 N -0.64 -25.05 2.83 -794.03 -2.25 -27.30 16 5 C 0.11 3.39 7.30 86.83 0.63 4.02 16 6 C -0.12 -4.32 6.68 31.65 0.21 -4.11 16 7 C 0.00 0.24 2.84 -11.55 -0.03 0.21 16 8 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 9 C -0.55 -31.34 8.53 25.60 0.22 -31.12 16 10 H 0.06 3.49 7.62 -2.91 -0.02 3.46 16 11 C 0.02 0.95 5.14 84.66 0.44 1.38 16 12 N -0.88 -56.02 11.02 21.45 0.24 -55.78 16 13 Si 0.95 46.42 29.54 68.60 2.03 48.44 16 14 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 17 C 0.51 26.49 6.76 87.90 0.59 27.08 16 18 O -0.54 -33.16 12.45 -3.02 -0.04 -33.20 16 19 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 20 H 0.03 1.09 6.80 -2.38 -0.02 1.08 16 21 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.12 2.68 8.07 -2.39 -0.02 2.66 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.03 1.13 6.78 -2.39 -0.02 1.12 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 29 H 0.07 2.52 7.78 -2.39 -0.02 2.50 16 30 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -74.37 246.76 4.62 -69.75 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.10 Total: 4.76 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 3.54 Total: -6.67 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -2.01 Total: -83.08 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.04 Total: -33.20 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.37 4.62 -69.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261326150.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.140 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds