Wall clock time and date at job start Mon Mar 30 2020 02:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45757 * 117.94329 * 2 1 4 4 C 1.52927 * 110.48164 * 160.92718 * 3 2 1 5 5 H 1.09002 * 109.60306 * 290.99510 * 4 3 2 6 6 C 1.53004 * 109.60071 * 170.50785 * 4 3 2 7 7 C 1.50705 * 109.46971 * 64.99869 * 6 4 3 8 8 H 1.08002 * 119.99996 * 359.97438 * 7 6 4 9 9 C 1.37880 * 119.99441 * 179.97438 * 7 6 4 10 10 N 1.31501 * 120.00370 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99299 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47540 * 90.00173 * 11 9 7 13 13 H 1.48505 * 109.46747 * 210.00258 * 11 9 7 14 14 H 1.48498 * 109.47431 * 329.99646 * 11 9 7 15 15 C 1.53343 * 108.67352 * 50.75510 * 4 3 2 16 16 C 1.53077 * 108.42279 * 292.46450 * 15 4 3 17 17 C 1.33350 * 117.94441 * 180.02562 * 2 1 3 18 18 O 1.21283 * 118.24631 * 2.23990 * 17 2 1 19 19 H 1.09001 * 109.47445 * 89.99657 * 1 2 3 20 20 H 1.08998 * 109.47496 * 209.99860 * 1 2 3 21 21 H 1.09004 * 109.47302 * 330.00185 * 1 2 3 22 22 H 1.08995 * 109.30501 * 40.61565 * 3 2 1 23 23 H 1.09002 * 109.29865 * 281.23473 * 3 2 1 24 24 H 1.08995 * 109.47194 * 184.99854 * 6 4 3 25 25 H 1.09004 * 109.47051 * 305.00226 * 6 4 3 26 26 H 0.96998 * 120.00265 * 179.97438 * 10 9 7 27 27 H 1.08996 * 109.67680 * 52.20007 * 15 4 3 28 28 H 1.09006 * 109.67271 * 172.73944 * 15 4 3 29 29 H 1.08997 * 109.39609 * 169.03735 * 16 15 4 30 30 H 1.09002 * 109.39996 * 288.86269 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5949 1.1259 0.4681 5 1 3.6101 0.8725 1.5282 6 6 4.3578 2.4320 0.2380 7 6 3.7764 3.5139 1.1113 8 1 2.9455 3.2922 1.7647 9 6 4.3052 4.7868 1.0760 10 7 5.3166 5.0568 0.2801 11 14 3.5850 6.1276 2.1590 12 1 4.2889 6.1395 3.4664 13 1 3.7535 7.4447 1.4941 14 1 2.1398 5.8647 2.3773 15 6 4.2492 -0.0013 -0.3398 16 6 3.5837 -1.3240 0.0485 17 6 2.0899 -1.1780 -0.0005 18 8 1.4158 -2.1853 -0.0427 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6271 1.9719 0.6696 23 1 2.1398 1.6998 -1.0091 24 1 5.4086 2.2880 0.4891 25 1 4.2709 2.7240 -0.8086 26 1 5.6884 5.9524 0.2550 27 1 4.1086 0.1814 -1.4051 28 1 5.3142 -0.0456 -0.1119 29 1 3.8942 -2.1034 -0.6473 30 1 3.8868 -1.5989 1.0588 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261332622.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:04 Heat of formation + Delta-G solvation = -74.604961 kcal Electronic energy + Delta-G solvation = -12705.279135 eV Core-core repulsion = 10498.861531 eV Total energy + Delta-G solvation = -2206.417604 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.42457 -38.01349 -35.61768 -34.59877 -32.00673 -28.56915 -27.78921 -25.70134 -24.11430 -21.89486 -19.53195 -18.47984 -17.42127 -17.22061 -16.78805 -16.38227 -15.30686 -15.22109 -14.38144 -14.20802 -13.88381 -13.51672 -13.43118 -13.15452 -12.95568 -12.74257 -12.38161 -12.30435 -11.96312 -11.64252 -11.21597 -10.92694 -10.66196 -10.50269 -9.70697 -8.14885 -6.23846 1.43813 1.45058 1.54472 1.61287 2.13263 2.44502 3.19881 3.63507 3.92660 3.96505 4.03082 4.44616 4.47057 4.60704 4.65608 4.71775 4.87840 4.91204 4.94474 5.15453 5.21990 5.30885 5.44465 5.58177 5.76682 5.89564 6.28391 6.47459 6.92215 7.13098 7.45169 8.96432 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052820 B = 0.009093 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.973708 B = 3078.585131 C = 3459.143574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.605 5.605 3 C 0.132 3.868 4 C -0.088 4.088 5 H 0.065 0.935 6 C 0.037 3.963 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.954 3.046 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.262 1.262 15 C -0.113 4.113 16 C -0.124 4.124 17 C 0.508 3.492 18 O -0.605 6.605 19 H 0.061 0.939 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.000 1.000 25 H 0.000 1.000 26 H 0.261 0.739 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 -7.072 -0.092 8.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.336 5.336 3 C 0.010 3.990 4 C -0.107 4.107 5 H 0.084 0.916 6 C 0.000 4.000 7 C -0.570 4.570 8 H 0.082 0.918 9 C -0.195 4.195 10 N -0.572 5.572 11 Si 0.780 3.220 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.186 1.186 15 C -0.151 4.151 16 C -0.163 4.163 17 C 0.299 3.701 18 O -0.488 6.488 19 H 0.080 0.920 20 H 0.087 0.913 21 H 0.106 0.894 22 H 0.097 0.903 23 H 0.080 0.920 24 H 0.019 0.981 25 H 0.018 0.982 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.462 -7.419 -0.170 9.214 hybrid contribution -0.073 1.095 0.399 1.168 sum -5.535 -6.324 0.230 8.408 Atomic orbital electron populations 1.21810 0.79029 1.03489 1.02537 1.47507 1.08275 1.06545 1.71230 1.21430 0.93350 0.82544 1.01650 1.21382 0.93636 0.96310 0.99403 0.91623 1.18945 0.94456 0.90986 0.95643 1.21657 1.16595 0.95160 1.23563 0.91833 1.25846 0.95421 1.01283 0.96913 1.70069 1.25803 1.21581 1.39759 0.85607 0.79303 0.78380 0.78724 1.20349 1.21312 1.18597 1.21712 1.00749 0.92474 1.00168 1.21646 0.89037 0.99993 1.05674 1.20709 0.92193 0.82298 0.74939 1.90634 1.67655 1.37006 1.53538 0.92017 0.91341 0.89405 0.90297 0.92030 0.98123 0.98172 0.92969 0.91604 0.89890 0.86992 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.96 10.22 127.77 1.31 3.26 16 2 N -0.60 -19.08 3.21 -851.60 -2.73 -21.81 16 3 C 0.13 4.44 5.35 86.49 0.46 4.90 16 4 C -0.09 -3.19 2.21 -10.70 -0.02 -3.22 16 5 H 0.07 2.40 8.12 -2.39 -0.02 2.38 16 6 C 0.04 1.75 4.45 29.85 0.13 1.88 16 7 C -0.53 -27.43 8.52 25.60 0.22 -27.21 16 8 H 0.06 3.12 7.08 -2.91 -0.02 3.10 16 9 C 0.00 0.18 5.46 84.66 0.46 0.64 16 10 N -0.93 -53.83 13.28 21.45 0.28 -53.55 16 11 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 15 C -0.11 -3.38 5.33 30.73 0.16 -3.22 16 16 C -0.12 -3.36 6.03 29.71 0.18 -3.18 16 17 C 0.51 16.84 7.47 87.71 0.65 17.49 16 18 O -0.60 -23.36 16.21 -3.04 -0.05 -23.41 16 19 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.07 1.90 7.21 -2.39 -0.02 1.88 16 21 H 0.09 1.97 7.86 -2.39 -0.02 1.96 16 22 H 0.08 2.70 7.02 -2.39 -0.02 2.69 16 23 H 0.06 2.10 8.09 -2.39 -0.02 2.08 16 24 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.00 0.00 8.12 -2.39 -0.02 -0.02 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 28 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -62.29 249.26 4.19 -58.10 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.10 Total: 5.27 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 3.56 Total: -8.65 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -2.45 Total: -75.36 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -62.29 4.19 -58.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261332622.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.505 kcal (2) G-P(sol) polarization free energy of solvation -62.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds