Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45755 * 117.94446 * 2 1 4 4 C 1.52919 * 110.48685 * 199.07653 * 3 2 1 5 5 H 1.09007 * 109.60337 * 69.16846 * 4 3 2 6 6 C 1.52998 * 109.60341 * 189.49025 * 4 3 2 7 7 C 1.50706 * 109.47348 * 295.00028 * 6 4 3 8 8 H 1.08005 * 119.99758 * 359.97438 * 7 6 4 9 9 C 1.37871 * 120.00102 * 179.97438 * 7 6 4 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47057 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 300.00068 * 11 9 7 14 14 H 1.48504 * 109.47102 * 60.00417 * 11 9 7 15 15 C 1.53340 * 108.67535 * 309.24832 * 4 3 2 16 16 C 1.53079 * 108.41395 * 67.54591 * 15 4 3 17 17 C 1.33349 * 117.95168 * 180.02562 * 2 1 3 18 18 O 1.21291 * 118.24239 * 357.79314 * 17 2 1 19 19 H 1.08995 * 109.47583 * 90.00480 * 1 2 3 20 20 H 1.09005 * 109.46906 * 209.99721 * 1 2 3 21 21 H 1.09002 * 109.47605 * 329.99683 * 1 2 3 22 22 H 1.08999 * 109.29878 * 78.76406 * 3 2 1 23 23 H 1.09000 * 109.13412 * 319.28428 * 3 2 1 24 24 H 1.09001 * 109.47671 * 175.00237 * 6 4 3 25 25 H 1.09006 * 109.47297 * 54.99957 * 6 4 3 26 26 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 27 27 H 1.09000 * 109.67371 * 187.27026 * 15 4 3 28 28 H 1.09007 * 109.67429 * 307.79758 * 15 4 3 29 29 H 1.09004 * 109.39954 * 190.95891 * 16 15 4 30 30 H 1.08995 * 109.33307 * 71.17293 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5948 1.1260 -0.4682 5 1 3.6101 0.8755 -1.5290 6 6 4.3577 2.4321 -0.2381 7 6 3.7762 3.5141 -1.1113 8 1 2.9458 3.2921 -1.7653 9 6 4.3043 4.7871 -1.0753 10 7 5.3158 5.0573 -0.2794 11 14 3.5840 6.1280 -2.1583 12 1 4.3236 7.3960 -1.9340 13 1 3.7033 5.7303 -3.5840 14 1 2.1520 6.3238 -1.8171 15 6 4.2492 -0.0012 0.3395 16 6 3.5838 -1.3239 -0.0492 17 6 2.0900 -1.1779 -0.0005 18 8 1.4159 -2.1854 0.0402 19 1 -0.3634 -0.0001 -1.0276 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3634 0.8899 0.5139 22 1 2.1397 1.6998 1.0090 23 1 1.6259 1.9690 -0.6717 24 1 5.4086 2.2882 -0.4893 25 1 4.2709 2.7241 0.8085 26 1 5.6900 4.3609 0.2827 27 1 5.3142 -0.0453 0.1117 28 1 4.1087 0.1814 1.4050 29 1 3.8944 -2.1036 0.6464 30 1 3.8882 -1.5977 -1.0594 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261332623.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = -59.998775 kcal Electronic energy + Delta-G solvation = -12734.527927 eV Core-core repulsion = 10528.743695 eV Total energy + Delta-G solvation = -2205.784232 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.12590 -36.61831 -34.27418 -33.02832 -30.29358 -27.12368 -25.93220 -24.18694 -22.54475 -20.60212 -18.24010 -16.90369 -16.13340 -15.99567 -15.37304 -14.13974 -13.94235 -13.77253 -13.08380 -12.82017 -12.53518 -12.21050 -12.02841 -11.82739 -11.36449 -11.09248 -10.78724 -10.46796 -10.21000 -10.14130 -9.75317 -9.35082 -8.59678 -8.40385 -8.39697 -6.42770 -4.13466 2.90379 3.35990 3.39712 3.40978 3.59591 4.48397 4.85610 5.16597 5.18329 5.27806 5.35794 5.52561 5.60264 5.78977 5.85540 5.95455 5.99938 6.05943 6.17272 6.50072 6.60224 6.67824 6.74533 7.25274 7.38469 7.75661 8.09977 8.37310 8.42010 8.80379 9.58782 10.97546 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052480 B = 0.009152 C = 0.008132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.407324 B = 3058.679794 C = 3442.174243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.605 5.605 3 C 0.125 3.875 4 C -0.088 4.088 5 H 0.068 0.932 6 C 0.018 3.982 7 C -0.604 4.604 8 H 0.050 0.950 9 C 0.016 3.984 10 N -0.911 5.911 11 Si 1.066 2.934 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.288 1.288 15 C -0.122 4.122 16 C -0.132 4.132 17 C 0.515 3.485 18 O -0.575 6.575 19 H 0.052 0.948 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.014 0.986 25 H 0.011 0.989 26 H 0.269 0.731 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 -7.184 0.635 8.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.336 5.336 3 C 0.003 3.997 4 C -0.107 4.107 5 H 0.087 0.913 6 C -0.020 4.020 7 C -0.642 4.642 8 H 0.068 0.932 9 C -0.188 4.188 10 N -0.547 5.547 11 Si 0.894 3.106 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.160 4.160 16 C -0.172 4.172 17 C 0.304 3.696 18 O -0.456 6.456 19 H 0.071 0.929 20 H 0.094 0.906 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.101 0.899 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.069 -6.074 0.252 7.916 hybrid contribution -0.149 -1.479 0.356 1.529 sum -5.219 -7.554 0.607 9.201 Atomic orbital electron populations 1.21652 0.80346 1.02854 1.01740 1.47456 1.07277 1.07026 1.71861 1.21596 0.93914 0.82342 1.01839 1.21423 0.93198 0.97068 0.99022 0.91331 1.19221 0.95062 0.90740 0.96963 1.22026 1.19571 0.96328 1.26277 0.93194 1.25815 0.95385 0.99339 0.98236 1.70794 1.22947 1.37158 1.23793 0.83579 0.75579 0.75953 0.75464 1.20766 1.21448 1.21437 1.21817 1.00346 0.93204 1.00599 1.21639 0.91122 1.00141 1.04266 1.20216 0.91125 0.82668 0.75557 1.90646 1.66811 1.36161 1.52004 0.92919 0.90634 0.91312 0.91908 0.89870 0.96767 0.97077 0.92052 0.90853 0.91737 0.88879 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.24 59.85 0.61 1.71 16 2 N -0.60 -10.12 3.21 -182.86 -0.59 -10.71 16 3 C 0.12 2.21 5.29 -4.48 -0.02 2.19 16 4 C -0.09 -1.66 2.21 -90.49 -0.20 -1.86 16 5 H 0.07 1.34 8.13 -51.92 -0.42 0.91 16 6 C 0.02 0.41 3.76 -27.88 -0.10 0.31 16 7 C -0.60 -15.95 8.52 -34.44 -0.29 -16.24 16 8 H 0.05 1.29 7.08 -52.48 -0.37 0.92 16 9 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 10 N -0.91 -26.84 13.65 55.43 0.76 -26.08 16 11 Si 1.07 24.31 29.90 -169.99 -5.08 19.22 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 15 C -0.12 -1.92 5.33 -26.51 -0.14 -2.07 16 16 C -0.13 -1.95 6.03 -28.10 -0.17 -2.12 16 17 C 0.52 9.03 7.47 -11.88 -0.09 8.94 16 18 O -0.58 -11.54 16.18 5.55 0.09 -11.45 16 19 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 20 H 0.07 1.10 7.13 -51.93 -0.37 0.73 16 21 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 22 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 23 H 0.08 1.53 7.21 -51.93 -0.37 1.16 16 24 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 25 H 0.01 0.27 7.98 -51.93 -0.41 -0.15 16 26 H 0.27 7.85 7.22 -40.82 -0.29 7.56 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.00 8.13 -51.92 -0.42 0.58 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 248.15 15.07 3.74 3.74 Total: -1.00 -30.49 248.15 -6.00 -36.49 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.41 Total: -2.43 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.51 Total: -8.79 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.17 Total: -36.79 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.49 -6.00 -36.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261332623.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.507 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds