Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 C 1.52995 * 109.47145 * 239.99909 * 2 1 3 5 5 N 1.46500 * 109.47141 * 119.99502 * 2 1 3 6 6 C 1.35834 * 132.38415 * 239.94460 * 5 2 1 7 7 O 1.21286 * 134.17059 * 0.02562 * 6 5 2 8 8 C 1.51508 * 91.65293 * 180.02562 * 6 5 2 9 9 C 1.47393 * 132.37552 * 59.99818 * 5 2 1 10 10 H 1.08995 * 113.70358 * 65.56193 * 9 5 2 11 11 C 1.50693 * 113.70902 * 294.35694 * 9 5 2 12 12 H 1.08000 * 120.00405 * 3.59565 * 11 9 5 13 13 C 1.37882 * 119.99769 * 183.59944 * 11 9 5 14 14 N 1.31520 * 119.99887 * 180.02562 * 13 11 9 15 15 Si 1.86794 * 120.00128 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47310 * 89.99843 * 15 13 11 17 17 H 1.48504 * 109.47308 * 210.00356 * 15 13 11 18 18 H 1.48506 * 109.47291 * 329.99746 * 15 13 11 19 19 H 1.09002 * 109.47332 * 300.00399 * 1 2 3 20 20 H 1.09001 * 109.47146 * 59.99724 * 1 2 3 21 21 H 1.08998 * 109.47206 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47462 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47430 * 299.99548 * 3 2 1 24 24 H 1.09002 * 109.47432 * 59.99662 * 3 2 1 25 25 H 1.09007 * 109.46891 * 299.99831 * 4 2 1 26 26 H 1.08994 * 109.47441 * 60.00100 * 4 2 1 27 27 H 1.09004 * 109.46790 * 180.02562 * 4 2 1 28 28 H 1.09004 * 113.68981 * 245.57367 * 8 6 5 29 29 H 1.08996 * 113.78299 * 114.43226 * 8 6 5 30 30 H 0.96994 * 119.99797 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 2.7973 -0.2862 2.2330 7 8 3.3444 0.7568 2.5225 8 6 2.7138 -1.6512 2.8852 9 6 1.8362 -2.0661 1.6931 10 1 2.2910 -2.8256 1.0572 11 6 0.4141 -2.3902 2.0720 12 1 -0.3668 -1.6614 1.9123 13 6 0.1098 -3.6172 2.6225 14 7 -1.1314 -3.9002 2.9526 15 14 1.4605 -4.8774 2.8993 16 1 2.0407 -4.6918 4.2536 17 1 0.8922 -6.2449 2.7874 18 1 2.5225 -4.6977 1.8769 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.1300 1.4426 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 -1.7490 -1.2491 26 1 1.6767 -0.2075 -2.1392 27 1 3.1300 -0.7216 -1.2489 28 1 2.1854 -1.6493 3.8387 29 1 3.6679 -2.1761 2.9299 30 1 -1.3454 -4.7632 3.3402 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261333582.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = -18.288619 kcal Electronic energy + Delta-G solvation = -13130.375963 eV Core-core repulsion = 10926.400419 eV Total energy + Delta-G solvation = -2203.975544 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.81118 -36.17059 -34.97592 -32.45075 -27.92516 -26.89960 -26.80979 -25.91387 -21.57726 -20.44215 -17.25947 -16.92536 -15.83816 -15.51500 -14.98613 -13.97851 -13.44667 -13.40421 -12.78185 -12.72286 -12.22989 -11.94178 -11.74736 -11.40875 -11.19433 -11.16113 -10.89511 -10.78619 -10.61126 -10.23237 -10.11914 -9.40631 -8.92710 -8.74846 -7.76725 -6.26206 -4.29965 3.18067 3.25119 3.27233 3.33601 3.85207 4.24497 4.94012 5.00850 5.37150 5.40159 5.54051 5.87783 5.90281 6.01943 6.11249 6.11495 6.21060 6.28874 6.37182 6.46428 6.49791 6.66341 6.83737 6.95818 7.38663 7.55781 7.59605 8.33114 8.78999 9.14760 9.34799 10.85103 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038753 B = 0.013883 C = 0.012071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.347326 B = 2016.372963 C = 2318.958169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.172 3.828 3 C -0.144 4.144 4 C -0.151 4.151 5 N -0.610 5.610 6 C 0.526 3.474 7 O -0.544 6.544 8 C -0.197 4.197 9 C 0.240 3.760 10 H 0.055 0.945 11 C -0.526 4.526 12 H 0.089 0.911 13 C 0.082 3.918 14 N -0.888 5.888 15 Si 0.869 3.131 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.261 1.261 19 H 0.054 0.946 20 H 0.049 0.951 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 2.742 -5.543 7.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.089 3.911 3 C -0.202 4.202 4 C -0.210 4.210 5 N -0.346 5.346 6 C 0.314 3.686 7 O -0.422 6.422 8 C -0.238 4.238 9 C 0.139 3.861 10 H 0.073 0.927 11 C -0.563 4.563 12 H 0.107 0.893 13 C -0.123 4.123 14 N -0.524 5.524 15 Si 0.695 3.305 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.186 1.186 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.099 0.901 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.032 3.236 -5.502 8.129 hybrid contribution 0.484 -0.794 0.186 0.948 sum 5.517 2.443 -5.316 8.041 Atomic orbital electron populations 1.22190 0.94115 1.03949 1.00690 1.20246 0.94317 0.91509 0.85073 1.21962 1.01430 0.94975 1.01837 1.22103 1.00791 1.01416 0.96640 1.51436 1.48744 1.14207 1.20234 1.22257 0.76613 0.88638 0.81105 1.90608 1.49127 1.30321 1.72190 1.24287 1.01586 0.95005 1.02917 1.20593 0.96619 0.80609 0.88318 0.92747 1.21057 0.91446 1.01729 1.42111 0.89270 1.24845 0.95316 0.97656 0.94471 1.69875 1.17891 1.23151 1.41493 0.86959 0.82620 0.81189 0.79729 1.19556 1.21031 1.18588 0.92663 0.93210 0.90129 0.92431 0.92130 0.92117 0.91764 0.92233 0.92989 0.87229 0.89516 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 7.66 37.16 0.28 -2.43 16 2 C 0.17 3.09 1.37 -131.82 -0.18 2.91 16 3 C -0.14 -2.40 7.45 37.16 0.28 -2.12 16 4 C -0.15 -2.35 8.73 37.16 0.32 -2.02 16 5 N -0.61 -12.69 2.84 -157.51 -0.45 -13.14 16 6 C 0.53 11.48 9.02 -10.27 -0.09 11.39 16 7 O -0.54 -12.85 16.90 5.55 0.09 -12.75 16 8 C -0.20 -4.05 6.86 -27.14 -0.19 -4.23 16 9 C 0.24 5.28 3.44 -68.38 -0.24 5.05 16 10 H 0.05 1.18 6.81 -51.93 -0.35 0.82 16 11 C -0.53 -13.41 8.62 -34.44 -0.30 -13.71 16 12 H 0.09 2.49 6.38 -52.49 -0.34 2.15 16 13 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 14 N -0.89 -25.10 13.96 55.43 0.77 -24.32 16 15 Si 0.87 19.36 26.98 -169.99 -4.59 14.77 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.26 -5.49 6.34 56.52 0.36 -5.13 16 19 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.08 1.62 6.65 -51.93 -0.35 1.27 16 22 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 1.10 7.95 -51.93 -0.41 0.69 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.11 2.29 8.00 -51.93 -0.42 1.88 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 248.92 15.07 3.75 3.75 Total: -1.00 -28.45 248.92 -5.03 -33.49 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.41 Total: 1.34 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.20 Total: -3.13 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.33 Total: -37.47 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.59 Total: 14.77 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.45 -5.03 -33.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333582.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.197 kcal (2) G-P(sol) polarization free energy of solvation -28.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds