Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 C 1.52995 * 109.47145 * 239.99909 * 2 1 3 5 5 N 1.46500 * 109.47141 * 119.99502 * 2 1 3 6 6 C 1.35834 * 132.38415 * 239.94460 * 5 2 1 7 7 O 1.21286 * 134.17059 * 0.02562 * 6 5 2 8 8 C 1.51508 * 91.65293 * 180.02562 * 6 5 2 9 9 C 1.47393 * 132.37552 * 59.99818 * 5 2 1 10 10 H 1.08995 * 113.70358 * 65.56193 * 9 5 2 11 11 C 1.50693 * 113.70902 * 294.35694 * 9 5 2 12 12 H 1.08000 * 120.00405 * 3.59565 * 11 9 5 13 13 C 1.37882 * 119.99769 * 183.59944 * 11 9 5 14 14 N 1.31520 * 119.99887 * 180.02562 * 13 11 9 15 15 Si 1.86794 * 120.00128 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47310 * 89.99843 * 15 13 11 17 17 H 1.48504 * 109.47308 * 210.00356 * 15 13 11 18 18 H 1.48506 * 109.47291 * 329.99746 * 15 13 11 19 19 H 1.09002 * 109.47332 * 300.00399 * 1 2 3 20 20 H 1.09001 * 109.47146 * 59.99724 * 1 2 3 21 21 H 1.08998 * 109.47206 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47462 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47430 * 299.99548 * 3 2 1 24 24 H 1.09002 * 109.47432 * 59.99662 * 3 2 1 25 25 H 1.09007 * 109.46891 * 299.99831 * 4 2 1 26 26 H 1.08994 * 109.47441 * 60.00100 * 4 2 1 27 27 H 1.09004 * 109.46790 * 180.02562 * 4 2 1 28 28 H 1.09004 * 113.68981 * 245.57367 * 8 6 5 29 29 H 1.08996 * 113.78299 * 114.43226 * 8 6 5 30 30 H 0.96994 * 119.99797 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 2.7973 -0.2862 2.2330 7 8 3.3444 0.7568 2.5225 8 6 2.7138 -1.6512 2.8852 9 6 1.8362 -2.0661 1.6931 10 1 2.2910 -2.8256 1.0572 11 6 0.4141 -2.3902 2.0720 12 1 -0.3668 -1.6614 1.9123 13 6 0.1098 -3.6172 2.6225 14 7 -1.1314 -3.9002 2.9526 15 14 1.4605 -4.8774 2.8993 16 1 2.0407 -4.6918 4.2536 17 1 0.8922 -6.2449 2.7874 18 1 2.5225 -4.6977 1.8769 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.1300 1.4426 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 -1.7490 -1.2491 26 1 1.6767 -0.2075 -2.1392 27 1 3.1300 -0.7216 -1.2489 28 1 2.1854 -1.6493 3.8387 29 1 3.6679 -2.1761 2.9299 30 1 -1.3454 -4.7632 3.3402 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261333582.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = -36.399593 kcal Electronic energy + Delta-G solvation = -13131.161314 eV Core-core repulsion = 10926.400419 eV Total energy + Delta-G solvation = -2204.760895 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.48427 -37.83620 -36.55051 -34.43473 -29.69230 -28.27023 -28.20159 -27.66394 -23.42298 -21.96792 -19.16709 -18.63688 -17.43701 -17.20878 -16.71102 -15.76497 -14.92238 -14.86759 -14.62913 -14.18660 -13.94870 -13.30449 -13.12441 -12.96310 -12.94914 -12.62117 -12.51285 -12.37151 -12.21212 -11.79887 -11.75822 -11.27785 -10.75613 -10.58523 -9.45330 -8.27348 -6.36466 1.45000 1.45978 1.54193 1.62664 2.26424 2.38311 3.04821 3.32742 3.91990 4.01552 4.13006 4.23071 4.48080 4.66763 4.71599 4.72996 4.83842 4.87114 4.91158 4.99485 5.12360 5.13278 5.28765 5.43961 5.55649 5.88667 5.93059 6.35168 6.71377 7.27680 7.51085 8.87350 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038753 B = 0.013883 C = 0.012071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.347326 B = 2016.372963 C = 2318.958169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.157 3.843 3 C -0.135 4.135 4 C -0.144 4.144 5 N -0.611 5.611 6 C 0.519 3.481 7 O -0.566 6.566 8 C -0.189 4.189 9 C 0.238 3.762 10 H 0.071 0.929 11 C -0.525 4.525 12 H 0.050 0.950 13 C 0.028 3.972 14 N -0.940 5.940 15 Si 0.930 3.070 16 H -0.260 1.260 17 H -0.290 1.290 18 H -0.233 1.233 19 H 0.031 0.969 20 H 0.085 0.915 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.096 0.904 24 H 0.037 0.963 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.842 2.470 -6.692 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.074 3.926 3 C -0.193 4.193 4 C -0.202 4.202 5 N -0.346 5.346 6 C 0.307 3.693 7 O -0.446 6.446 8 C -0.229 4.229 9 C 0.136 3.864 10 H 0.088 0.912 11 C -0.562 4.562 12 H 0.068 0.932 13 C -0.172 4.172 14 N -0.578 5.578 15 Si 0.753 3.247 16 H -0.184 1.184 17 H -0.216 1.216 18 H -0.156 1.156 19 H 0.050 0.950 20 H 0.103 0.897 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.114 0.886 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.139 0.861 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.920 2.982 -6.677 10.068 hybrid contribution -0.202 -0.619 0.502 0.822 sum 6.718 2.363 -6.175 9.426 Atomic orbital electron populations 1.22087 0.94463 1.02215 1.01262 1.20636 0.94123 0.92611 0.85203 1.21896 1.00943 0.93952 1.02466 1.22041 1.01133 1.00726 0.96259 1.51526 1.48209 1.13842 1.20991 1.22468 0.76592 0.88790 0.81442 1.90591 1.50188 1.31148 1.72714 1.24285 1.02661 0.94219 1.01756 1.20471 0.94753 0.81643 0.89561 0.91188 1.21165 0.92572 1.00947 1.41563 0.93184 1.25678 0.97534 0.99862 0.94124 1.70025 1.20503 1.23939 1.43374 0.85971 0.80167 0.77783 0.80797 1.18440 1.21565 1.15593 0.95016 0.89669 0.92937 0.92974 0.88570 0.94406 0.92864 0.89154 0.92358 0.87925 0.86072 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 7.66 71.98 0.55 -4.48 16 2 C 0.16 5.38 1.37 3.60 0.00 5.38 16 3 C -0.14 -4.21 7.45 71.98 0.54 -3.67 16 4 C -0.14 -4.03 8.73 71.98 0.63 -3.40 16 5 N -0.61 -24.71 2.84 -770.01 -2.19 -26.90 16 6 C 0.52 22.00 9.02 87.64 0.79 22.79 16 7 O -0.57 -26.24 16.90 -3.05 -0.05 -26.29 16 8 C -0.19 -7.34 6.86 30.37 0.21 -7.13 16 9 C 0.24 10.10 3.44 44.22 0.15 10.25 16 10 H 0.07 2.81 6.81 -2.39 -0.02 2.79 16 11 C -0.52 -27.04 8.62 25.60 0.22 -26.82 16 12 H 0.05 2.92 6.38 -2.91 -0.02 2.90 16 13 C 0.03 1.45 5.47 84.66 0.46 1.92 16 14 N -0.94 -54.46 13.96 21.45 0.30 -54.16 16 15 Si 0.93 38.68 26.98 68.60 1.85 40.53 16 16 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 17 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.23 -8.56 6.34 99.48 0.63 -7.93 16 19 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 20 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 21 H 0.05 2.14 6.65 -2.39 -0.02 2.12 16 22 H 0.05 1.68 7.95 -2.38 -0.02 1.66 16 23 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.04 1.33 7.95 -2.39 -0.02 1.31 16 25 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.10 4.15 8.00 -2.38 -0.02 4.13 16 29 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 30 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -62.10 248.92 4.50 -57.60 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.03 Total: 14.39 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 3.56 Total: -5.17 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.89 Total: -81.06 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.85 Total: 40.53 kcal Total: -62.10 4.50 -57.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333582.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.202 kcal (2) G-P(sol) polarization free energy of solvation -62.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds