Wall clock time and date at job start Mon Mar 30 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 C 1.52996 * 109.47295 * 240.00246 * 2 1 3 5 5 N 1.46503 * 109.47240 * 120.00158 * 2 1 3 6 6 C 1.34607 * 134.66537 * 240.00145 * 5 2 1 7 7 O 1.21277 * 131.84423 * 359.96928 * 6 5 2 8 8 C 1.50375 * 96.31252 * 180.02562 * 6 5 2 9 9 C 1.46352 * 134.66722 * 59.99704 * 5 2 1 10 10 H 1.09003 * 113.05497 * 295.39150 * 9 5 2 11 11 C 1.50706 * 113.05112 * 64.54642 * 9 5 2 12 12 H 1.08000 * 119.99591 * 0.18921 * 11 9 5 13 13 C 1.37874 * 120.00258 * 180.18231 * 11 9 5 14 14 N 1.31515 * 119.99976 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00268 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46811 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47106 * 119.99911 * 15 13 11 18 18 H 1.48494 * 109.47306 * 240.00410 * 15 13 11 19 19 H 1.08996 * 109.46742 * 299.99693 * 1 2 3 20 20 H 1.08994 * 109.46750 * 59.99731 * 1 2 3 21 21 H 1.09003 * 109.46771 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46877 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47106 * 300.00085 * 3 2 1 24 24 H 1.09006 * 109.46743 * 60.00079 * 3 2 1 25 25 H 1.09010 * 109.46962 * 299.99977 * 4 2 1 26 26 H 1.09004 * 109.47169 * 59.99754 * 4 2 1 27 27 H 1.08998 * 109.47806 * 180.02562 * 4 2 1 28 28 H 1.09002 * 114.35929 * 246.54111 * 8 6 5 29 29 H 1.09004 * 114.34793 * 113.38599 * 8 6 5 30 30 H 0.96997 * 120.00468 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.7851 -0.3389 2.2451 7 8 3.3315 0.7045 2.5341 8 6 2.7389 -1.6726 2.9383 9 6 1.8707 -2.0430 1.7357 10 1 0.8433 -2.2836 2.0092 11 6 2.4946 -3.0991 0.8601 12 1 2.9882 -2.8168 -0.0580 13 6 2.4354 -4.4256 1.2313 14 7 1.8340 -4.7695 2.3492 15 14 3.2094 -5.7346 0.1464 16 1 3.8194 -5.0923 -1.0456 17 1 4.2588 -6.4546 0.9115 18 1 2.1659 -6.6971 -0.2891 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 1.6767 1.9563 0.8901 25 1 1.6767 -1.7489 -1.2493 26 1 1.6767 -0.2073 -2.1392 27 1 3.1300 -0.7216 -1.2491 28 1 2.2092 -1.6661 3.8909 29 1 3.6967 -2.1916 2.9784 30 1 1.7926 -5.7026 2.6106 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261333583.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:21 Heat of formation + Delta-G solvation = -35.091998 kcal Electronic energy + Delta-G solvation = -13103.223586 eV Core-core repulsion = 10898.519392 eV Total energy + Delta-G solvation = -2204.704193 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.66729 -37.72953 -36.59140 -34.34606 -29.32001 -28.33991 -28.20247 -27.54915 -23.54211 -22.07621 -18.97392 -18.35026 -17.35871 -17.18796 -16.56933 -16.01866 -14.94434 -14.87144 -14.20782 -14.16949 -13.64301 -13.37193 -13.09341 -12.94583 -12.82701 -12.61619 -12.57270 -12.36911 -12.14002 -12.09189 -11.53213 -11.26544 -10.72204 -10.46206 -9.44566 -8.16808 -6.29886 1.43443 1.47603 1.56907 1.71611 2.30381 2.47870 3.12742 3.38919 3.96109 4.02339 4.17634 4.50909 4.66669 4.68248 4.72867 4.83131 4.84179 4.92530 4.99181 5.05841 5.14163 5.29882 5.34619 5.48809 5.73916 5.97032 6.04692 6.21257 6.77108 7.37037 7.57546 8.90009 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038214 B = 0.013112 C = 0.011315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.537606 B = 2134.934075 C = 2473.896729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.169 3.831 3 C -0.135 4.135 4 C -0.144 4.144 5 N -0.612 5.612 6 C 0.506 3.494 7 O -0.586 6.586 8 C -0.157 4.157 9 C 0.261 3.739 10 H 0.036 0.964 11 C -0.534 4.534 12 H 0.065 0.935 13 C 0.029 3.971 14 N -0.911 5.911 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.279 1.279 19 H 0.050 0.950 20 H 0.095 0.905 21 H 0.049 0.951 22 H 0.039 0.961 23 H 0.100 0.900 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 4.844 -5.653 7.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.202 4.202 5 N -0.346 5.346 6 C 0.294 3.706 7 O -0.468 6.468 8 C -0.198 4.198 9 C 0.160 3.840 10 H 0.054 0.946 11 C -0.572 4.572 12 H 0.083 0.917 13 C -0.173 4.173 14 N -0.549 5.549 15 Si 0.781 3.219 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.205 1.205 19 H 0.069 0.931 20 H 0.114 0.886 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.118 0.882 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.320 5.339 -5.632 8.100 hybrid contribution 0.413 -0.966 -0.158 1.062 sum -1.906 4.374 -5.790 7.503 Atomic orbital electron populations 1.22051 0.93046 1.02200 1.02915 1.20576 0.94825 0.91988 0.83896 1.21901 1.00566 0.93941 1.02853 1.22114 1.00381 1.01202 0.96525 1.50756 1.48800 1.14463 1.20574 1.22514 0.77027 0.88584 0.82462 1.90529 1.50102 1.31921 1.74271 1.23338 1.03291 0.92993 1.00171 1.19594 0.95714 0.79740 0.88993 0.94635 1.21425 1.36485 0.91329 1.07977 0.91714 1.25600 0.95271 1.00206 0.96217 1.70027 1.43107 1.18429 1.23317 0.85543 0.78242 0.79041 0.79045 1.19392 1.20715 1.20471 0.93098 0.88626 0.93147 0.94131 0.88172 0.93569 0.92500 0.89172 0.94192 0.87749 0.88248 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 8.78 71.98 0.63 -3.66 16 2 C 0.17 5.89 1.42 3.60 0.01 5.90 16 3 C -0.14 -4.28 7.54 71.98 0.54 -3.74 16 4 C -0.14 -4.73 7.70 71.98 0.55 -4.18 16 5 N -0.61 -26.33 2.86 -837.56 -2.39 -28.73 16 6 C 0.51 23.42 8.71 79.63 0.69 24.11 16 7 O -0.59 -29.27 16.98 -3.02 -0.05 -29.32 16 8 C -0.16 -7.11 8.12 29.71 0.24 -6.87 16 9 C 0.26 12.41 3.94 36.28 0.14 12.55 16 10 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 11 C -0.53 -26.93 8.02 25.60 0.21 -26.72 16 12 H 0.06 3.27 6.29 -2.91 -0.02 3.26 16 13 C 0.03 1.45 5.46 84.65 0.46 1.91 16 14 N -0.91 -48.42 13.28 21.45 0.28 -48.14 16 15 Si 0.96 40.69 29.54 68.60 2.03 42.72 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 19 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 20 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 21 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.04 1.43 8.01 -2.39 -0.02 1.41 16 23 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.05 1.57 8.01 -2.38 -0.02 1.55 16 25 H 0.06 2.09 6.83 -2.38 -0.02 2.08 16 26 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.10 4.37 8.14 -2.39 -0.02 4.35 16 29 H 0.10 4.61 8.00 -2.38 -0.02 4.59 16 30 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 Total: -1.00 -58.42 254.25 4.45 -53.98 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.10 Total: 10.19 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 3.48 Total: -0.70 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -2.11 Total: -76.86 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.32 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -58.42 4.45 -53.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333583.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.884 kcal (2) G-P(sol) polarization free energy of solvation -58.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds