Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46746 * 2 1 4 4 C 1.52995 * 109.47240 * 120.00167 * 2 1 3 5 5 H 1.08998 * 115.54766 * 212.14856 * 4 2 1 6 6 C 1.53076 * 117.53352 * 357.86606 * 4 2 1 7 7 C 1.53000 * 117.49818 * 66.48267 * 4 2 1 8 8 H 1.08994 * 117.50335 * 144.97279 * 7 4 2 9 9 C 1.50699 * 117.50050 * 359.97182 * 7 4 2 10 10 O 1.21301 * 119.99897 * 27.66011 * 9 7 4 11 11 N 1.34769 * 120.00567 * 207.66368 * 9 7 4 12 12 C 1.37096 * 120.00707 * 180.02562 * 11 9 7 13 13 H 1.08005 * 119.99921 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00437 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00168 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00188 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47248 * 270.00617 * 16 14 12 18 18 H 1.48498 * 109.47182 * 150.00157 * 16 14 12 19 19 H 1.48503 * 109.46675 * 30.00171 * 16 14 12 20 20 H 1.08999 * 109.46941 * 302.25870 * 1 2 3 21 21 H 1.08998 * 109.47351 * 62.25759 * 1 2 3 22 22 H 1.08999 * 109.47236 * 182.26246 * 1 2 3 23 23 H 1.09006 * 109.46890 * 240.00514 * 2 1 3 24 24 H 1.09003 * 109.46883 * 62.19091 * 3 2 1 25 25 H 1.09002 * 109.46808 * 182.18719 * 3 2 1 26 26 H 1.08998 * 109.47831 * 302.18627 * 3 2 1 27 27 H 1.08996 * 117.51185 * 359.97438 * 6 4 2 28 28 H 1.09001 * 117.49033 * 214.95075 * 6 4 2 29 29 H 0.97007 * 119.99976 * 359.97438 * 11 9 7 30 30 H 0.97001 * 119.99799 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.9817 -0.3509 1.6543 6 6 0.9971 -1.2372 2.2438 7 6 1.7650 -2.2222 1.3600 8 1 2.5258 -2.8394 1.8378 9 6 1.0118 -2.8770 0.2308 10 8 1.0768 -2.4158 -0.8892 11 7 0.2661 -3.9748 0.4652 12 6 -0.4186 -4.5707 -0.5622 13 1 -0.3601 -4.1607 -1.5596 14 6 -1.1870 -5.7029 -0.3205 15 7 -1.2578 -6.2022 0.8929 16 14 -2.1205 -6.5145 -1.7203 17 1 -3.4771 -5.9190 -1.8215 18 1 -2.2377 -7.9714 -1.4581 19 1 -1.3887 -6.2980 -2.9943 20 1 -0.3633 0.5485 0.8690 21 1 -0.3634 0.4784 -0.9095 22 1 -0.3633 -1.0268 0.0406 23 1 1.8933 -0.5138 -0.8901 24 1 1.7090 1.9448 0.9090 25 1 3.1292 1.4428 -0.0392 26 1 1.6450 1.9676 -0.8697 27 1 -0.0528 -1.0624 2.0085 28 1 1.2531 -1.2060 3.3028 29 1 0.2144 -4.3438 1.3609 30 1 -0.7739 -5.7802 1.6201 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306198719.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = -26.258077 kcal Electronic energy + Delta-G solvation = -12777.123422 eV Core-core repulsion = 10572.802297 eV Total energy + Delta-G solvation = -2204.321126 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.37350 -36.60505 -34.14037 -32.70764 -30.87850 -26.79300 -25.25188 -23.09125 -22.81687 -19.44535 -18.69762 -17.76864 -16.40332 -15.15268 -14.54436 -14.35801 -13.94326 -13.71706 -12.94091 -12.39815 -12.30741 -11.98607 -11.30822 -11.20049 -11.01107 -10.90054 -10.50357 -10.36660 -10.21054 -9.90302 -9.75877 -9.46327 -9.42898 -8.19803 -7.99116 -6.73332 -3.85933 3.31077 3.35713 3.55047 3.76282 4.18184 4.31423 4.80514 5.04131 5.22994 5.32810 5.43469 5.52308 5.68505 5.75308 5.95675 5.96374 6.10994 6.18531 6.23580 6.31974 6.42601 6.47740 6.64545 6.92083 7.05382 7.83724 8.11388 8.64033 8.83653 9.52149 9.94144 10.70318 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058754 B = 0.009218 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.447608 B = 3036.654905 C = 3278.051119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.116 4.116 5 H 0.100 0.900 6 C -0.173 4.173 7 C -0.173 4.173 8 H 0.110 0.890 9 C 0.474 3.526 10 O -0.579 6.579 11 N -0.571 5.571 12 C -0.382 4.382 13 H 0.099 0.901 14 C -0.010 4.010 15 N -0.902 5.902 16 Si 1.093 2.907 17 H -0.285 1.285 18 H -0.281 1.281 19 H -0.284 1.284 20 H 0.040 0.960 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.376 0.624 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 8.801 2.460 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.200 4.200 4 C -0.134 4.134 5 H 0.118 0.882 6 C -0.210 4.210 7 C -0.194 4.194 8 H 0.128 0.872 9 C 0.260 3.740 10 O -0.464 6.464 11 N -0.207 5.207 12 C -0.512 4.512 13 H 0.117 0.883 14 C -0.212 4.212 15 N -0.541 5.541 16 Si 0.919 3.081 17 H -0.211 1.211 18 H -0.206 1.206 19 H -0.209 1.209 20 H 0.059 0.941 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.118 0.882 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.209 0.791 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.809 7.816 1.302 8.407 hybrid contribution 1.093 0.992 1.124 1.856 sum 3.903 8.808 2.426 9.935 Atomic orbital electron populations 1.21924 0.95481 1.02665 0.99737 1.20704 0.95861 0.94047 0.97922 1.21859 1.00265 0.96910 1.00959 1.22314 0.99157 0.93836 0.98139 0.88152 1.23202 0.98643 1.03238 0.95921 1.22218 1.03279 0.93257 1.00695 0.87230 1.18898 0.83636 0.82870 0.88561 1.90477 1.67031 1.64999 1.23872 1.41966 1.42774 1.25138 1.10857 1.20580 1.27098 1.11597 0.91894 0.88297 1.26495 0.97630 0.94721 1.02386 1.70857 1.41648 1.41299 1.00264 0.83105 0.75670 0.76162 0.73162 1.21136 1.20649 1.20947 0.94129 0.93621 0.91207 0.88177 0.93382 0.93291 0.93095 0.87998 0.89097 0.79068 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.28 37.16 0.27 -2.26 16 2 C -0.07 -1.15 2.42 -90.62 -0.22 -1.37 16 3 C -0.14 -1.93 9.14 37.16 0.34 -1.59 16 4 C -0.12 -1.88 5.73 -90.58 -0.52 -2.40 16 5 H 0.10 1.40 8.06 -51.93 -0.42 0.98 16 6 C -0.17 -2.75 9.30 -26.69 -0.25 -2.99 16 7 C -0.17 -3.21 6.17 -91.77 -0.57 -3.78 16 8 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 9 C 0.47 11.31 5.85 -10.99 -0.06 11.25 16 10 O -0.58 -15.38 12.35 5.54 0.07 -15.31 16 11 N -0.57 -14.63 5.28 -10.96 -0.06 -14.68 16 12 C -0.38 -10.83 9.68 -14.94 -0.14 -10.97 16 13 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 14 C -0.01 -0.27 5.50 -17.47 -0.10 -0.37 16 15 N -0.90 -25.59 13.68 55.50 0.76 -24.83 16 16 Si 1.09 24.55 29.92 -169.99 -5.09 19.47 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H 0.04 0.64 7.46 -51.93 -0.39 0.25 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.07 1.50 4.82 -51.93 -0.25 1.25 16 23 H 0.10 2.03 6.32 -51.93 -0.33 1.70 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.10 1.73 5.83 -51.93 -0.30 1.43 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.38 9.08 6.73 -40.82 -0.27 8.81 16 30 H 0.26 7.19 6.78 -40.82 -0.28 6.92 16 LS Contribution 245.66 15.07 3.70 3.70 Total: -1.00 -30.63 245.66 -5.81 -36.44 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -3.95 Total: 9.70 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.25 Total: -14.48 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.70 Total: -39.51 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.07 Total: -15.31 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.47 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.63 -5.81 -36.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306198719.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.182 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds