Wall clock time and date at job start Mon Mar 30 2020 01:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46746 * 2 1 4 4 C 1.52995 * 109.47240 * 120.00167 * 2 1 3 5 5 H 1.08998 * 115.54766 * 212.14856 * 4 2 1 6 6 C 1.53076 * 117.53352 * 357.86606 * 4 2 1 7 7 C 1.53000 * 117.49818 * 66.48267 * 4 2 1 8 8 H 1.08994 * 117.50335 * 144.97279 * 7 4 2 9 9 C 1.50699 * 117.50050 * 359.97182 * 7 4 2 10 10 O 1.21301 * 119.99897 * 27.66011 * 9 7 4 11 11 N 1.34769 * 120.00567 * 207.66368 * 9 7 4 12 12 C 1.37096 * 120.00707 * 180.02562 * 11 9 7 13 13 H 1.08005 * 119.99921 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00437 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00168 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00188 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47248 * 270.00617 * 16 14 12 18 18 H 1.48498 * 109.47182 * 150.00157 * 16 14 12 19 19 H 1.48503 * 109.46675 * 30.00171 * 16 14 12 20 20 H 1.08999 * 109.46941 * 302.25870 * 1 2 3 21 21 H 1.08998 * 109.47351 * 62.25759 * 1 2 3 22 22 H 1.08999 * 109.47236 * 182.26246 * 1 2 3 23 23 H 1.09006 * 109.46890 * 240.00514 * 2 1 3 24 24 H 1.09003 * 109.46883 * 62.19091 * 3 2 1 25 25 H 1.09002 * 109.46808 * 182.18719 * 3 2 1 26 26 H 1.08998 * 109.47831 * 302.18627 * 3 2 1 27 27 H 1.08996 * 117.51185 * 359.97438 * 6 4 2 28 28 H 1.09001 * 117.49033 * 214.95075 * 6 4 2 29 29 H 0.97007 * 119.99976 * 359.97438 * 11 9 7 30 30 H 0.97001 * 119.99799 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.9817 -0.3509 1.6543 6 6 0.9971 -1.2372 2.2438 7 6 1.7650 -2.2222 1.3600 8 1 2.5258 -2.8394 1.8378 9 6 1.0118 -2.8770 0.2308 10 8 1.0768 -2.4158 -0.8892 11 7 0.2661 -3.9748 0.4652 12 6 -0.4186 -4.5707 -0.5622 13 1 -0.3601 -4.1607 -1.5596 14 6 -1.1870 -5.7029 -0.3205 15 7 -1.2578 -6.2022 0.8929 16 14 -2.1205 -6.5145 -1.7203 17 1 -3.4771 -5.9190 -1.8215 18 1 -2.2377 -7.9714 -1.4581 19 1 -1.3887 -6.2980 -2.9943 20 1 -0.3633 0.5485 0.8690 21 1 -0.3634 0.4784 -0.9095 22 1 -0.3633 -1.0268 0.0406 23 1 1.8933 -0.5138 -0.8901 24 1 1.7090 1.9448 0.9090 25 1 3.1292 1.4428 -0.0392 26 1 1.6450 1.9676 -0.8697 27 1 -0.0528 -1.0624 2.0085 28 1 1.2531 -1.2060 3.3028 29 1 0.2144 -4.3438 1.3609 30 1 -0.7739 -5.7802 1.6201 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306198719.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:30 Heat of formation + Delta-G solvation = -46.086647 kcal Electronic energy + Delta-G solvation = -12777.983254 eV Core-core repulsion = 10572.802297 eV Total energy + Delta-G solvation = -2205.180957 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04361 -38.29537 -36.19201 -34.09095 -32.89506 -28.08906 -27.24157 -24.59158 -24.33401 -21.16611 -20.25498 -19.75320 -18.06232 -16.84613 -16.45249 -15.82077 -15.55892 -15.39372 -14.67634 -14.00967 -13.60368 -13.35312 -13.20162 -12.82740 -12.60679 -12.28221 -11.95701 -11.93460 -11.86613 -11.62978 -11.45812 -11.16293 -10.82596 -10.10326 -10.04454 -8.93285 -6.06240 1.50456 1.52766 1.80088 1.99142 2.40648 2.76935 3.07744 3.20805 3.71505 3.94524 4.03515 4.20624 4.36011 4.37521 4.53531 4.75671 4.80917 4.86081 4.93246 5.07507 5.09848 5.22452 5.35512 5.48186 5.61416 5.71148 5.96269 6.58172 6.76938 7.46977 7.96983 8.54514 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058754 B = 0.009218 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.447608 B = 3036.654905 C = 3278.051119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C -0.133 4.133 4 C -0.105 4.105 5 H 0.136 0.864 6 C -0.151 4.151 7 C -0.198 4.198 8 H 0.132 0.868 9 C 0.475 3.525 10 O -0.611 6.611 11 N -0.586 5.586 12 C -0.408 4.408 13 H 0.073 0.927 14 C -0.044 4.044 15 N -0.918 5.918 16 Si 1.135 2.865 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.277 1.277 20 H 0.065 0.935 21 H 0.042 0.958 22 H 0.026 0.974 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.382 0.618 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 10.007 3.628 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C -0.191 4.191 4 C -0.124 4.124 5 H 0.154 0.846 6 C -0.189 4.189 7 C -0.219 4.219 8 H 0.150 0.850 9 C 0.264 3.736 10 O -0.497 6.497 11 N -0.224 5.224 12 C -0.537 4.537 13 H 0.091 0.909 14 C -0.242 4.242 15 N -0.558 5.558 16 Si 0.955 3.045 17 H -0.196 1.196 18 H -0.197 1.197 19 H -0.203 1.203 20 H 0.083 0.917 21 H 0.061 0.939 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.148 0.852 29 H 0.216 0.784 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.406 9.041 2.494 9.978 hybrid contribution 0.954 0.704 0.750 1.403 sum 4.359 9.745 3.244 11.158 Atomic orbital electron populations 1.21863 0.96543 1.00174 1.00768 1.20671 0.95003 0.96425 0.96930 1.21768 1.01155 0.94053 1.02085 1.22534 1.00746 0.91369 0.97715 0.84585 1.23295 0.97712 1.00199 0.97650 1.22171 1.04573 0.94807 1.00370 0.84998 1.19908 0.82317 0.81710 0.89667 1.90462 1.67735 1.65515 1.25991 1.42040 1.43646 1.26098 1.10580 1.20548 1.28771 1.12656 0.91751 0.90925 1.27825 0.97751 0.94763 1.03869 1.70932 1.42400 1.41769 1.00684 0.82608 0.75249 0.75809 0.70844 1.19596 1.19669 1.20277 0.91653 0.93885 0.95458 0.92132 0.91449 0.91779 0.92878 0.89533 0.85221 0.78422 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 7.28 71.98 0.52 -4.32 16 2 C -0.07 -2.37 2.42 -10.79 -0.03 -2.39 16 3 C -0.13 -3.19 9.14 71.98 0.66 -2.54 16 4 C -0.11 -3.11 5.73 -10.77 -0.06 -3.17 16 5 H 0.14 3.10 8.06 -2.39 -0.02 3.09 16 6 C -0.15 -4.36 9.30 30.62 0.28 -4.08 16 7 C -0.20 -7.06 6.17 -11.54 -0.07 -7.13 16 8 H 0.13 4.11 8.14 -2.39 -0.02 4.09 16 9 C 0.48 23.16 5.85 87.66 0.51 23.67 16 10 O -0.61 -33.69 12.35 -3.09 -0.04 -33.73 16 11 N -0.59 -30.86 5.28 -306.99 -1.62 -32.48 16 12 C -0.41 -23.87 9.68 84.04 0.81 -23.06 16 13 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 14 C -0.04 -2.46 5.50 84.93 0.47 -1.99 16 15 N -0.92 -52.52 13.68 21.66 0.30 -52.22 16 16 Si 1.14 49.63 29.92 68.60 2.05 51.68 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 H 0.06 1.94 7.46 -2.39 -0.02 1.93 16 21 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.03 1.18 4.82 -2.39 -0.01 1.17 16 23 H 0.06 2.49 6.32 -2.38 -0.02 2.48 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 2.80 5.83 -2.39 -0.01 2.78 16 28 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.38 18.87 6.73 -92.70 -0.62 18.25 16 30 H 0.26 14.40 6.78 -92.71 -0.63 13.77 16 Total: -1.00 -68.14 245.66 4.44 -63.70 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.65 Total: 28.06 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 3.10 Total: -25.01 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -1.33 Total: -84.70 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.04 Total: -33.73 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.05 Total: 51.68 kcal Total: -68.14 4.44 -63.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306198719.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.610 kcal (2) G-P(sol) polarization free energy of solvation -68.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds