Wall clock time and date at job start Mon Mar 30 2020 01:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46853 * 2 1 4 4 C 1.53002 * 109.47344 * 120.00190 * 2 1 3 5 5 H 1.08996 * 115.55635 * 274.31278 * 4 2 1 6 6 C 1.52993 * 117.49912 * 128.62195 * 4 2 1 7 7 C 1.52995 * 60.00161 * 252.51192 * 6 4 2 8 8 H 1.08999 * 117.49892 * 107.51328 * 7 6 4 9 9 C 1.50699 * 117.49758 * 252.51506 * 7 6 4 10 10 O 1.21293 * 120.00471 * 68.60412 * 9 7 6 11 11 N 1.34777 * 119.99768 * 248.60351 * 9 7 6 12 12 C 1.37106 * 119.99958 * 179.97438 * 11 9 7 13 13 H 1.07992 * 120.00328 * 0.02562 * 12 11 9 14 14 C 1.38947 * 119.99689 * 179.97438 * 12 11 9 15 15 N 1.31414 * 120.00367 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99822 * 180.27886 * 14 12 11 17 17 H 1.48497 * 109.47322 * 179.73003 * 16 14 12 18 18 H 1.48506 * 109.47056 * 299.72747 * 16 14 12 19 19 H 1.48501 * 109.47099 * 59.72776 * 16 14 12 20 20 H 1.09001 * 109.47647 * 299.99710 * 1 2 3 21 21 H 1.08999 * 109.47412 * 60.00398 * 1 2 3 22 22 H 1.09002 * 109.46944 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46958 * 240.00343 * 2 1 3 24 24 H 1.08998 * 109.46779 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46786 * 299.99985 * 3 2 1 26 26 H 1.08997 * 109.46868 * 60.00250 * 3 2 1 27 27 H 1.09005 * 117.49750 * 145.01822 * 6 4 2 28 28 H 1.08998 * 117.51809 * 359.97438 * 6 4 2 29 29 H 0.97000 * 120.00327 * 0.02562 * 11 9 7 30 30 H 0.97005 * 120.00032 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1448 6 6 3.0741 -1.8313 1.0513 7 6 1.6358 -2.1853 1.4342 8 1 1.0066 -2.6349 0.6660 9 6 1.3885 -2.6664 2.8407 10 8 1.5124 -1.9016 3.7740 11 7 1.0296 -3.9465 3.0617 12 6 0.8052 -4.3844 4.3414 13 1 0.9155 -3.7035 5.1723 14 6 0.4347 -5.7041 4.5692 15 7 0.3000 -6.5326 3.5581 16 14 0.1213 -6.2987 6.3121 17 1 -0.2635 -7.7327 6.2842 18 1 1.3556 -6.1331 7.1211 19 1 -0.9772 -5.5030 6.9165 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1299 1.4426 -0.0005 25 1 1.6765 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.8416 -1.9465 1.8167 28 1 3.3910 -2.0483 0.0312 29 1 0.9309 -4.5583 2.3155 30 1 0.0417 -7.4540 3.7171 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306198721.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:32 Heat of formation + Delta-G solvation = -37.520266 kcal Electronic energy + Delta-G solvation = -12320.626150 eV Core-core repulsion = 10115.816659 eV Total energy + Delta-G solvation = -2204.809491 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.92084 -36.75441 -33.91809 -32.85799 -31.13214 -27.03507 -25.60720 -23.03768 -22.37982 -19.62175 -18.82161 -17.77325 -16.15537 -14.92565 -14.66712 -14.12878 -13.88686 -13.30346 -13.13712 -12.90666 -12.20715 -12.04769 -11.71772 -11.51774 -11.10884 -11.06706 -10.87143 -10.45109 -10.40550 -10.21322 -9.77109 -9.57390 -9.41765 -8.36521 -7.94736 -6.39977 -3.80510 3.20057 3.26658 3.31299 3.68961 4.17462 4.42531 4.71042 5.08983 5.14097 5.31663 5.34099 5.53265 5.57960 5.77538 5.78461 5.87021 5.99519 6.01072 6.08117 6.19732 6.30591 6.43927 6.49552 6.58021 6.78051 7.56329 8.08454 8.63940 9.19309 9.58439 10.10537 10.77685 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071472 B = 0.007288 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.666093 B = 3841.019420 C = 3886.793011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.121 4.121 5 H 0.113 0.887 6 C -0.159 4.159 7 C -0.165 4.165 8 H 0.108 0.892 9 C 0.468 3.532 10 O -0.598 6.598 11 N -0.557 5.557 12 C -0.302 4.302 13 H 0.102 0.898 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.931 3.069 17 H -0.284 1.284 18 H -0.273 1.273 19 H -0.273 1.273 20 H 0.056 0.944 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.394 0.606 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 7.814 -7.953 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.200 4.200 4 C -0.140 4.140 5 H 0.131 0.869 6 C -0.197 4.197 7 C -0.186 4.186 8 H 0.126 0.874 9 C 0.254 3.746 10 O -0.484 6.484 11 N -0.192 5.192 12 C -0.431 4.431 13 H 0.120 0.880 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.758 3.242 17 H -0.209 1.209 18 H -0.199 1.199 19 H -0.199 1.199 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.227 0.773 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.880 8.090 -7.316 11.068 hybrid contribution -0.270 -0.909 0.382 1.022 sum 1.610 7.181 -6.934 10.112 Atomic orbital electron populations 1.21812 0.95073 1.02110 1.01287 1.20710 0.95732 0.95767 0.96151 1.21793 1.00945 0.95782 1.01451 1.22331 1.02061 0.90171 0.99416 0.86890 1.22987 0.91875 1.02995 1.01823 1.22200 0.99292 0.99415 0.97718 0.87392 1.19049 0.83887 0.83195 0.88452 1.90494 1.58100 1.55386 1.44394 1.41821 1.59352 1.08717 1.09264 1.19689 1.43336 0.95059 0.85034 0.88000 1.25273 0.97266 0.95798 0.99557 1.69614 1.47721 1.05937 1.30919 0.85913 0.79038 0.77411 0.81821 1.20929 1.19892 1.19877 0.92460 0.93191 0.92438 0.91471 0.92704 0.93028 0.92560 0.88768 0.88899 0.77310 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.03 37.16 0.34 -1.55 16 2 C -0.07 -0.85 3.07 -90.62 -0.28 -1.12 16 3 C -0.14 -1.59 9.18 37.16 0.34 -1.25 16 4 C -0.12 -1.99 4.66 -90.62 -0.42 -2.41 16 5 H 0.11 2.10 7.64 -51.93 -0.40 1.70 16 6 C -0.16 -2.57 9.88 -26.74 -0.26 -2.84 16 7 C -0.16 -3.12 5.39 -91.78 -0.49 -3.62 16 8 H 0.11 1.85 7.61 -51.93 -0.40 1.46 16 9 C 0.47 11.66 7.57 -10.99 -0.08 11.58 16 10 O -0.60 -16.95 15.83 5.55 0.09 -16.86 16 11 N -0.56 -14.75 5.29 -10.96 -0.06 -14.81 16 12 C -0.30 -8.66 9.68 -14.93 -0.14 -8.80 16 13 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 14 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 15 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 16 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.79 7.29 -51.93 -0.38 0.41 16 23 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.09 1.24 8.05 -51.93 -0.42 0.83 16 29 H 0.39 10.00 7.90 -40.82 -0.32 9.68 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 259.71 15.07 3.91 3.91 Total: -1.00 -30.85 259.71 -5.83 -36.68 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.37 Total: 8.48 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.11 Total: -9.49 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.67 Total: -39.08 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.09 Total: -16.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.85 -5.83 -36.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306198721.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.837 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds