Wall clock time and date at job start Mon Mar 30 2020 01:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46853 * 2 1 4 4 C 1.53002 * 109.47344 * 120.00190 * 2 1 3 5 5 H 1.08996 * 115.55635 * 274.31278 * 4 2 1 6 6 C 1.52993 * 117.49912 * 128.62195 * 4 2 1 7 7 C 1.52995 * 60.00161 * 252.51192 * 6 4 2 8 8 H 1.08999 * 117.49892 * 107.51328 * 7 6 4 9 9 C 1.50699 * 117.49758 * 252.51506 * 7 6 4 10 10 O 1.21293 * 120.00471 * 68.60412 * 9 7 6 11 11 N 1.34777 * 119.99768 * 248.60351 * 9 7 6 12 12 C 1.37106 * 119.99958 * 179.97438 * 11 9 7 13 13 H 1.07992 * 120.00328 * 0.02562 * 12 11 9 14 14 C 1.38947 * 119.99689 * 179.97438 * 12 11 9 15 15 N 1.31414 * 120.00367 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99822 * 180.27886 * 14 12 11 17 17 H 1.48497 * 109.47322 * 179.73003 * 16 14 12 18 18 H 1.48506 * 109.47056 * 299.72747 * 16 14 12 19 19 H 1.48501 * 109.47099 * 59.72776 * 16 14 12 20 20 H 1.09001 * 109.47647 * 299.99710 * 1 2 3 21 21 H 1.08999 * 109.47412 * 60.00398 * 1 2 3 22 22 H 1.09002 * 109.46944 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46958 * 240.00343 * 2 1 3 24 24 H 1.08998 * 109.46779 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46786 * 299.99985 * 3 2 1 26 26 H 1.08997 * 109.46868 * 60.00250 * 3 2 1 27 27 H 1.09005 * 117.49750 * 145.01822 * 6 4 2 28 28 H 1.08998 * 117.51809 * 359.97438 * 6 4 2 29 29 H 0.97000 * 120.00327 * 0.02562 * 11 9 7 30 30 H 0.97005 * 120.00032 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1448 6 6 3.0741 -1.8313 1.0513 7 6 1.6358 -2.1853 1.4342 8 1 1.0066 -2.6349 0.6660 9 6 1.3885 -2.6664 2.8407 10 8 1.5124 -1.9016 3.7740 11 7 1.0296 -3.9465 3.0617 12 6 0.8052 -4.3844 4.3414 13 1 0.9155 -3.7035 5.1723 14 6 0.4347 -5.7041 4.5692 15 7 0.3000 -6.5326 3.5581 16 14 0.1213 -6.2987 6.3121 17 1 -0.2635 -7.7327 6.2842 18 1 1.3556 -6.1331 7.1211 19 1 -0.9772 -5.5030 6.9165 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1299 1.4426 -0.0005 25 1 1.6765 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.8416 -1.9465 1.8167 28 1 3.3910 -2.0483 0.0312 29 1 0.9309 -4.5583 2.3155 30 1 0.0417 -7.4540 3.7171 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306198721.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:32 Heat of formation + Delta-G solvation = -57.405745 kcal Electronic energy + Delta-G solvation = -12321.488449 eV Core-core repulsion = 10115.816659 eV Total energy + Delta-G solvation = -2205.671790 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64500 -38.34303 -35.98631 -34.10373 -33.23891 -28.02269 -27.57854 -24.65838 -23.69199 -21.01160 -20.53875 -19.79595 -17.94563 -16.75779 -16.16448 -15.74838 -15.46451 -15.11962 -14.72802 -13.95229 -13.57275 -13.49338 -13.25037 -12.99035 -12.93141 -12.48498 -12.17677 -12.09158 -12.00300 -11.57673 -11.51497 -11.06566 -10.86758 -10.39029 -10.06911 -8.50509 -6.00410 1.36589 1.39291 1.51126 1.89204 2.27296 2.86543 3.10508 3.26345 3.85625 3.90812 4.07507 4.19765 4.45140 4.49031 4.53604 4.71004 4.87299 4.89360 5.00825 5.07566 5.12161 5.25954 5.34096 5.36507 5.48658 5.58974 5.95770 6.54485 7.06767 7.51479 8.06926 8.66792 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071472 B = 0.007288 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.666093 B = 3841.019420 C = 3886.793011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.110 4.110 5 H 0.084 0.916 6 C -0.139 4.139 7 C -0.184 4.184 8 H 0.130 0.870 9 C 0.462 3.538 10 O -0.641 6.641 11 N -0.566 5.566 12 C -0.342 4.342 13 H 0.078 0.922 14 C -0.011 4.011 15 N -0.919 5.919 16 Si 0.996 3.004 17 H -0.267 1.267 18 H -0.271 1.271 19 H -0.271 1.271 20 H 0.040 0.960 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.397 0.603 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 7.810 -9.373 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.129 4.129 5 H 0.103 0.897 6 C -0.177 4.177 7 C -0.205 4.205 8 H 0.148 0.852 9 C 0.250 3.750 10 O -0.530 6.530 11 N -0.201 5.201 12 C -0.471 4.471 13 H 0.096 0.904 14 C -0.211 4.211 15 N -0.559 5.559 16 Si 0.819 3.181 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.196 1.196 20 H 0.059 0.941 21 H 0.095 0.905 22 H 0.065 0.935 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.231 0.769 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.066 8.079 -8.766 12.099 hybrid contribution -0.315 -0.877 0.810 1.235 sum 1.751 7.202 -7.956 10.873 Atomic orbital electron populations 1.21831 0.95174 1.01588 1.01813 1.20760 0.95595 0.96637 0.94802 1.21784 1.01380 0.94539 1.02077 1.22416 1.01528 0.88851 1.00144 0.89739 1.23132 0.89760 1.01348 1.03435 1.22096 1.02332 1.01833 0.94287 0.85238 1.20082 0.81971 0.82256 0.90659 1.90453 1.59541 1.56281 1.46701 1.41900 1.59940 1.09487 1.08726 1.19687 1.46083 0.95785 0.85583 0.90406 1.26108 0.96056 0.95197 1.03784 1.69675 1.47187 1.06363 1.32664 0.84950 0.78867 0.77518 0.76747 1.19108 1.19591 1.19634 0.94100 0.90532 0.93500 0.89204 0.92063 0.90761 0.93618 0.90301 0.84805 0.76920 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.03 71.98 0.65 -2.85 16 2 C -0.06 -1.39 3.07 -10.79 -0.03 -1.42 16 3 C -0.14 -2.76 9.18 71.98 0.66 -2.10 16 4 C -0.11 -3.52 4.66 -10.80 -0.05 -3.57 16 5 H 0.08 3.20 7.64 -2.39 -0.02 3.18 16 6 C -0.14 -4.24 9.88 30.59 0.30 -3.94 16 7 C -0.18 -6.88 5.39 -11.54 -0.06 -6.95 16 8 H 0.13 4.26 7.61 -2.39 -0.02 4.24 16 9 C 0.46 23.68 7.57 87.66 0.66 24.35 16 10 O -0.64 -37.93 15.83 -3.07 -0.05 -37.97 16 11 N -0.57 -30.82 5.29 -306.99 -1.62 -32.44 16 12 C -0.34 -20.23 9.68 84.04 0.81 -19.42 16 13 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 14 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 15 N -0.92 -50.71 13.05 21.66 0.28 -50.43 16 16 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.05 1.20 7.29 -2.39 -0.02 1.19 16 23 H 0.09 1.75 7.90 -2.38 -0.02 1.73 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 28 H 0.13 3.02 8.05 -2.39 -0.02 3.00 16 29 H 0.40 20.57 7.90 -92.71 -0.73 19.84 16 30 H 0.28 14.36 8.31 -92.70 -0.77 13.59 16 Total: -1.00 -67.93 259.71 4.44 -63.49 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.39 Total: 27.70 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 3.41 Total: -16.06 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.34 Total: -82.87 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.05 Total: -37.97 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.93 4.44 -63.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306198721.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.085 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds