Wall clock time and date at job start Mon Mar 30 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 H 1.09001 * 115.54587 * 325.71700 * 4 2 1 6 6 C 1.52998 * 117.50032 * 111.39237 * 4 2 1 7 7 C 1.52998 * 59.99988 * 107.48866 * 6 4 2 8 8 H 1.09001 * 117.49885 * 252.50843 * 7 6 4 9 9 C 1.50701 * 117.49868 * 107.48592 * 7 6 4 10 10 O 1.21289 * 120.00409 * 291.38077 * 9 7 6 11 11 N 1.34781 * 119.99932 * 111.37710 * 9 7 6 12 12 C 1.37097 * 120.00188 * 180.02562 * 11 9 7 13 13 H 1.07997 * 119.99905 * 359.97438 * 12 11 9 14 14 C 1.38950 * 119.99903 * 180.02562 * 12 11 9 15 15 N 1.31409 * 120.00293 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99660 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46989 * 89.99768 * 16 14 12 18 18 H 1.48507 * 109.46916 * 209.99401 * 16 14 12 19 19 H 1.48502 * 109.47352 * 329.99430 * 16 14 12 20 20 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 1.09000 * 117.49782 * 214.98143 * 6 4 2 28 28 H 1.08999 * 117.49898 * 359.97438 * 6 4 2 29 29 H 0.96998 * 119.99946 * 0.02562 * 11 9 7 30 30 H 0.96998 * 120.00059 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4306 -0.5986 2.1446 6 6 2.7422 -2.0661 1.0514 7 6 3.5550 -0.8278 1.4345 8 1 4.1884 -0.3841 0.6663 9 6 4.0908 -0.7550 2.8411 10 8 3.3283 -0.6168 3.7742 11 7 5.4174 -0.8434 3.0624 12 6 5.9048 -0.7777 4.3421 13 1 5.2259 -0.6546 5.1728 14 6 7.2725 -0.8683 4.5700 15 7 8.0987 -1.0176 3.5591 16 14 7.9367 -0.7780 6.3136 17 1 8.0013 -2.1450 6.8901 18 1 9.2976 -0.1839 6.2948 19 1 7.0393 0.0667 7.1421 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.5950 -2.8282 1.8167 28 1 2.8405 -2.4373 0.0312 29 1 6.0272 -0.9536 2.3161 30 1 9.0534 -1.0812 3.7183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306198723.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:34 Heat of formation + Delta-G solvation = -37.568993 kcal Electronic energy + Delta-G solvation = -12320.761110 eV Core-core repulsion = 10115.949506 eV Total energy + Delta-G solvation = -2204.811604 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.92185 -36.75587 -33.92011 -32.85862 -31.13340 -27.03536 -25.60866 -23.03852 -22.38070 -19.62242 -18.82274 -17.77465 -16.15706 -14.92741 -14.66708 -14.13095 -13.88114 -13.30452 -13.14212 -12.90712 -12.20783 -12.04778 -11.72110 -11.51895 -11.11031 -11.08751 -10.87264 -10.43407 -10.37479 -10.21891 -9.77419 -9.57695 -9.42406 -8.36640 -7.94840 -6.40211 -3.80604 3.17806 3.27227 3.33393 3.68788 4.17410 4.42479 4.70940 5.08936 5.14014 5.31607 5.34039 5.53214 5.57877 5.77492 5.78396 5.86959 5.99486 6.01030 6.08070 6.19676 6.30516 6.43851 6.49555 6.57959 6.77968 7.56419 8.08558 8.63825 9.19320 9.58385 10.10435 10.77567 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071506 B = 0.007288 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.481873 B = 3841.075504 C = 3887.170981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.146 4.146 4 C -0.121 4.121 5 H 0.113 0.887 6 C -0.159 4.159 7 C -0.165 4.165 8 H 0.108 0.892 9 C 0.468 3.532 10 O -0.598 6.598 11 N -0.557 5.557 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.269 1.269 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.393 0.607 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.017 0.850 -7.951 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.203 4.203 4 C -0.140 4.140 5 H 0.131 0.869 6 C -0.197 4.197 7 C -0.186 4.186 8 H 0.126 0.874 9 C 0.254 3.746 10 O -0.484 6.484 11 N -0.192 5.192 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.227 0.773 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.285 0.938 -7.312 11.090 hybrid contribution 0.957 -0.061 0.375 1.030 sum -7.328 0.876 -6.937 10.129 Atomic orbital electron populations 1.21792 0.95130 1.01596 1.01451 1.20709 0.95499 0.96001 0.96149 1.21814 1.01458 0.95725 1.01287 1.22334 0.93649 0.98591 0.99417 0.86892 1.22987 1.03596 0.91275 1.01823 1.22202 0.94778 1.03920 0.97717 0.87392 1.19050 0.83090 0.83978 0.88450 1.90494 1.57348 1.56106 1.44405 1.41827 1.05196 1.62888 1.09272 1.19737 0.91376 1.46902 0.85034 0.87948 1.25274 0.95838 0.97258 0.99561 1.69618 1.03858 1.49830 1.30873 0.85852 0.78009 0.78545 0.81846 1.20378 1.20889 1.19402 0.92706 0.92559 0.93029 0.91472 0.92435 0.93185 0.92465 0.88769 0.88900 0.77316 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.17 37.16 0.34 -1.25 16 2 C -0.07 -0.85 3.07 -90.62 -0.28 -1.12 16 3 C -0.15 -1.88 9.03 37.16 0.34 -1.55 16 4 C -0.12 -1.99 4.66 -90.62 -0.42 -2.41 16 5 H 0.11 2.10 7.64 -51.93 -0.40 1.70 16 6 C -0.16 -2.57 9.88 -26.73 -0.26 -2.84 16 7 C -0.16 -3.12 5.39 -91.77 -0.49 -3.62 16 8 H 0.11 1.85 7.61 -51.93 -0.39 1.46 16 9 C 0.47 11.66 7.57 -10.98 -0.08 11.58 16 10 O -0.60 -16.94 15.83 5.55 0.09 -16.85 16 11 N -0.56 -14.76 5.29 -10.96 -0.06 -14.81 16 12 C -0.30 -8.64 9.68 -14.93 -0.14 -8.78 16 13 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 15 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 16 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 24 H 0.06 0.79 7.29 -51.93 -0.38 0.41 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 29 H 0.39 9.99 7.90 -40.82 -0.32 9.67 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -30.88 259.70 -5.83 -36.71 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.37 Total: 8.45 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.11 Total: -9.48 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.67 Total: -39.07 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.09 Total: -16.85 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.88 -5.83 -36.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306198723.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.863 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds