Wall clock time and date at job start Mon Mar 30 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 H 1.09001 * 115.54587 * 325.71700 * 4 2 1 6 6 C 1.52998 * 117.50032 * 111.39237 * 4 2 1 7 7 C 1.52998 * 59.99988 * 107.48866 * 6 4 2 8 8 H 1.09001 * 117.49885 * 252.50843 * 7 6 4 9 9 C 1.50701 * 117.49868 * 107.48592 * 7 6 4 10 10 O 1.21289 * 120.00409 * 291.38077 * 9 7 6 11 11 N 1.34781 * 119.99932 * 111.37710 * 9 7 6 12 12 C 1.37097 * 120.00188 * 180.02562 * 11 9 7 13 13 H 1.07997 * 119.99905 * 359.97438 * 12 11 9 14 14 C 1.38950 * 119.99903 * 180.02562 * 12 11 9 15 15 N 1.31409 * 120.00293 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99660 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46989 * 89.99768 * 16 14 12 18 18 H 1.48507 * 109.46916 * 209.99401 * 16 14 12 19 19 H 1.48502 * 109.47352 * 329.99430 * 16 14 12 20 20 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 1.09000 * 117.49782 * 214.98143 * 6 4 2 28 28 H 1.08999 * 117.49898 * 359.97438 * 6 4 2 29 29 H 0.96998 * 119.99946 * 0.02562 * 11 9 7 30 30 H 0.96998 * 120.00059 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4306 -0.5986 2.1446 6 6 2.7422 -2.0661 1.0514 7 6 3.5550 -0.8278 1.4345 8 1 4.1884 -0.3841 0.6663 9 6 4.0908 -0.7550 2.8411 10 8 3.3283 -0.6168 3.7742 11 7 5.4174 -0.8434 3.0624 12 6 5.9048 -0.7777 4.3421 13 1 5.2259 -0.6546 5.1728 14 6 7.2725 -0.8683 4.5700 15 7 8.0987 -1.0176 3.5591 16 14 7.9367 -0.7780 6.3136 17 1 8.0013 -2.1450 6.8901 18 1 9.2976 -0.1839 6.2948 19 1 7.0393 0.0667 7.1421 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.5950 -2.8282 1.8167 28 1 2.8405 -2.4373 0.0312 29 1 6.0272 -0.9536 2.3161 30 1 9.0534 -1.0812 3.7183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306198723.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:34 Heat of formation + Delta-G solvation = -57.479357 kcal Electronic energy + Delta-G solvation = -12321.624488 eV Core-core repulsion = 10115.949506 eV Total energy + Delta-G solvation = -2205.674982 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64606 -38.34384 -35.98858 -34.10389 -33.24022 -28.02288 -27.58005 -24.65938 -23.69183 -21.01274 -20.53880 -19.79761 -17.94725 -16.76228 -16.16169 -15.74597 -15.46672 -15.12031 -14.73042 -13.95234 -13.58103 -13.49348 -13.25156 -12.99078 -12.93308 -12.47425 -12.17533 -12.09176 -12.00312 -11.58187 -11.51473 -11.06618 -10.86755 -10.39143 -10.06851 -8.50763 -6.00512 1.34850 1.39335 1.52899 1.88985 2.27234 2.86526 3.10339 3.26244 3.85585 3.90829 4.07478 4.19760 4.45120 4.48989 4.53579 4.71009 4.87285 4.89389 5.00833 5.07558 5.12172 5.25923 5.34069 5.36657 5.48676 5.58960 5.95809 6.54403 7.06824 7.51426 8.06870 8.66809 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071506 B = 0.007288 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.481873 B = 3841.075504 C = 3887.170981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.147 4.147 4 C -0.111 4.111 5 H 0.084 0.916 6 C -0.139 4.139 7 C -0.184 4.184 8 H 0.130 0.870 9 C 0.462 3.538 10 O -0.641 6.641 11 N -0.566 5.566 12 C -0.341 4.341 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.919 5.919 16 Si 0.996 3.004 17 H -0.269 1.269 18 H -0.267 1.267 19 H -0.273 1.273 20 H 0.060 0.940 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.397 0.603 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 0.651 -9.382 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.204 4.204 4 C -0.130 4.130 5 H 0.103 0.897 6 C -0.177 4.177 7 C -0.205 4.205 8 H 0.148 0.852 9 C 0.250 3.750 10 O -0.530 6.530 11 N -0.201 5.201 12 C -0.470 4.470 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.559 5.559 16 Si 0.819 3.181 17 H -0.194 1.194 18 H -0.192 1.192 19 H -0.198 1.198 20 H 0.079 0.921 21 H 0.064 0.936 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.231 0.769 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.316 0.733 -8.773 12.110 hybrid contribution 0.938 -0.001 0.807 1.237 sum -7.378 0.732 -7.966 10.882 Atomic orbital electron populations 1.21783 0.93652 1.02268 1.02077 1.20758 0.96672 0.95559 0.94802 1.21832 1.00796 0.95967 1.01813 1.22419 0.91194 0.99198 1.00145 0.89743 1.23131 1.00914 0.90189 1.03437 1.22096 0.96645 1.07513 0.94282 0.85233 1.20084 0.82293 0.81917 0.90657 1.90453 1.58183 1.57614 1.46718 1.41903 1.05980 1.63462 1.08729 1.19718 0.92026 1.49727 0.85566 0.90426 1.26107 0.95358 0.95923 1.03781 1.69677 1.04399 1.49215 1.32613 0.84887 0.77627 0.78831 0.76722 1.19406 1.19197 1.19784 0.92063 0.93619 0.90761 0.89203 0.93496 0.90525 0.94109 0.90298 0.84803 0.76921 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.17 71.98 0.66 -2.10 16 2 C -0.06 -1.38 3.07 -10.79 -0.03 -1.42 16 3 C -0.15 -3.50 9.03 71.98 0.65 -2.85 16 4 C -0.11 -3.52 4.66 -10.79 -0.05 -3.57 16 5 H 0.08 3.20 7.64 -2.39 -0.02 3.18 16 6 C -0.14 -4.24 9.88 30.59 0.30 -3.94 16 7 C -0.18 -6.88 5.39 -11.54 -0.06 -6.94 16 8 H 0.13 4.26 7.61 -2.39 -0.02 4.24 16 9 C 0.46 23.69 7.57 87.66 0.66 24.35 16 10 O -0.64 -37.94 15.83 -3.06 -0.05 -37.99 16 11 N -0.57 -30.82 5.29 -306.98 -1.62 -32.45 16 12 C -0.34 -20.17 9.68 84.04 0.81 -19.36 16 13 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 14 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 15 N -0.92 -50.70 13.05 21.66 0.28 -50.42 16 16 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.09 1.75 7.90 -2.39 -0.02 1.73 16 24 H 0.05 1.21 7.29 -2.38 -0.02 1.19 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.13 3.01 8.05 -2.39 -0.02 2.99 16 29 H 0.40 20.56 7.90 -92.71 -0.73 19.83 16 30 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -68.00 259.70 4.44 -63.56 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.39 Total: 27.57 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 3.41 Total: -16.00 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.34 Total: -82.86 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.05 Total: -37.99 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.00 4.44 -63.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306198723.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.082 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds