Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46965 * 2 1 4 4 C 1.52994 * 109.47456 * 119.99990 * 2 1 3 5 5 H 1.09005 * 115.55494 * 280.00166 * 4 2 1 6 6 C 1.53000 * 117.50038 * 134.33385 * 4 2 1 7 7 C 1.52997 * 117.50048 * 65.67155 * 4 2 1 8 8 H 1.09001 * 117.50169 * 215.02745 * 7 4 2 9 9 C 1.50699 * 117.49696 * 0.02682 * 7 4 2 10 10 O 1.21293 * 119.99851 * 30.47419 * 9 7 4 11 11 N 1.34773 * 120.00187 * 210.47549 * 9 7 4 12 12 C 1.37102 * 120.00283 * 179.97438 * 11 9 7 13 13 H 1.07996 * 119.99978 * 0.02562 * 12 11 9 14 14 C 1.38953 * 120.00048 * 179.97438 * 12 11 9 15 15 N 1.31407 * 119.99681 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00016 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47302 * 89.99550 * 16 14 12 18 18 H 1.48501 * 109.46990 * 209.99898 * 16 14 12 19 19 H 1.48506 * 109.47153 * 330.00034 * 16 14 12 20 20 H 1.09001 * 109.46972 * 170.47723 * 1 2 3 21 21 H 1.09002 * 109.46670 * 290.47533 * 1 2 3 22 22 H 1.08994 * 109.47125 * 50.47755 * 1 2 3 23 23 H 1.09000 * 109.47149 * 240.00095 * 2 1 3 24 24 H 1.08999 * 109.47091 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47361 * 299.99965 * 3 2 1 26 26 H 1.09000 * 109.47109 * 60.00071 * 3 2 1 27 27 H 1.09000 * 117.49867 * 359.97367 * 6 4 2 28 28 H 1.08999 * 117.50169 * 145.00175 * 6 4 2 29 29 H 0.97006 * 120.00055 * 359.97438 * 11 9 7 30 30 H 0.97001 * 119.99519 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 2.0358 -0.1326 2.1666 6 6 3.1697 -1.7368 1.0668 7 6 1.7485 -2.2183 1.3691 8 1 1.5520 -2.6146 2.3653 9 6 0.9814 -2.8699 0.2475 10 8 1.0851 -2.4462 -0.8843 11 7 0.1801 -3.9232 0.5019 12 6 -0.5182 -4.5156 -0.5185 13 1 -0.4258 -4.1385 -1.5262 14 6 -1.3439 -5.6020 -0.2562 15 7 -2.0128 -6.1701 -1.2343 16 14 -1.5030 -6.2549 1.4868 17 1 -2.6178 -5.5575 2.1767 18 1 -1.7812 -7.7130 1.4457 19 1 -0.2365 -6.0131 2.2235 20 1 -0.3633 -1.0135 -0.1700 21 1 -0.3633 0.3595 0.9628 22 1 -0.3633 0.6539 -0.7927 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.5493 -1.8915 0.0568 28 1 3.9086 -1.8164 1.8642 29 1 0.0974 -4.2623 1.4070 30 1 -2.5895 -6.9282 -1.0511 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306198725.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = -44.970646 kcal Electronic energy + Delta-G solvation = -12729.378301 eV Core-core repulsion = 10524.245737 eV Total energy + Delta-G solvation = -2205.132564 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.94564 -38.06863 -35.83152 -34.25503 -33.64012 -28.04616 -27.57492 -24.29653 -23.66835 -21.27608 -21.00760 -19.58848 -17.78603 -16.75502 -16.30082 -15.68957 -15.43432 -14.94296 -14.62847 -14.25845 -13.91696 -13.69145 -13.01852 -12.98406 -12.92305 -12.42943 -12.05692 -11.99915 -11.96051 -11.58404 -11.51101 -10.97361 -10.80138 -10.23726 -10.17268 -8.42259 -6.01583 1.28210 1.32644 1.42052 1.82830 2.21461 2.91526 2.93298 3.30634 3.76585 4.01553 4.09507 4.27299 4.36858 4.51354 4.57133 4.77904 4.85291 4.93151 4.95590 5.09490 5.15083 5.27108 5.41091 5.53383 5.57401 5.74648 5.97298 6.59311 6.89061 7.41918 8.00212 8.75576 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054043 B = 0.009706 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.978818 B = 2884.179135 C = 3079.487221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.073 4.073 3 C -0.133 4.133 4 C -0.103 4.103 5 H 0.142 0.858 6 C -0.138 4.138 7 C -0.198 4.198 8 H 0.138 0.862 9 C 0.482 3.518 10 O -0.609 6.609 11 N -0.593 5.593 12 C -0.325 4.325 13 H 0.056 0.944 14 C -0.016 4.016 15 N -0.935 5.935 16 Si 0.963 3.037 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.235 1.235 20 H 0.027 0.973 21 H 0.063 0.937 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.136 0.864 29 H 0.387 0.613 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.695 9.639 11.877 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.190 4.190 4 C -0.122 4.122 5 H 0.159 0.841 6 C -0.175 4.175 7 C -0.219 4.219 8 H 0.156 0.844 9 C 0.271 3.729 10 O -0.495 6.495 11 N -0.233 5.233 12 C -0.454 4.454 13 H 0.074 0.926 14 C -0.214 4.214 15 N -0.576 5.576 16 Si 0.783 3.217 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.158 1.158 20 H 0.046 0.954 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.154 0.846 29 H 0.222 0.778 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.611 9.754 11.033 16.577 hybrid contribution -0.684 -1.021 0.117 1.234 sum 6.927 8.734 11.150 15.767 Atomic orbital electron populations 1.21777 0.96409 1.00532 1.01021 1.20721 0.94984 0.96572 0.96848 1.21749 1.01219 0.94033 1.02026 1.22503 1.00769 0.88444 1.00471 0.84064 1.23114 0.89691 1.01403 1.03294 1.22282 1.01164 0.99955 0.98485 0.84391 1.19953 0.81860 0.81315 0.89788 1.90504 1.68245 1.65361 1.25344 1.42047 1.42049 1.29777 1.09445 1.19008 1.23076 1.12960 0.90336 0.92590 1.26082 0.95320 0.96185 1.03843 1.69802 1.29351 1.23813 1.34649 0.85391 0.80529 0.78557 0.77237 1.18185 1.19830 1.15816 0.95427 0.91818 0.93547 0.92658 0.91834 0.93191 0.91240 0.90529 0.84629 0.77761 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 8.73 71.98 0.63 -4.31 16 2 C -0.07 -2.32 2.25 -10.79 -0.02 -2.34 16 3 C -0.13 -3.10 9.18 71.98 0.66 -2.44 16 4 C -0.10 -2.80 5.05 -10.80 -0.05 -2.85 16 5 H 0.14 2.78 8.14 -2.38 -0.02 2.76 16 6 C -0.14 -3.70 9.74 30.62 0.30 -3.40 16 7 C -0.20 -6.38 6.12 -11.52 -0.07 -6.45 16 8 H 0.14 3.53 8.14 -2.39 -0.02 3.51 16 9 C 0.48 22.36 5.90 87.66 0.52 22.87 16 10 O -0.61 -33.28 12.19 -3.07 -0.04 -33.31 16 11 N -0.59 -29.15 5.09 -306.99 -1.56 -30.71 16 12 C -0.32 -19.46 10.16 84.04 0.85 -18.61 16 13 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 14 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 15 N -0.94 -57.39 13.96 21.66 0.30 -57.09 16 16 Si 0.96 40.04 27.74 68.60 1.90 41.94 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.23 -8.38 6.52 99.48 0.65 -7.73 16 20 H 0.03 1.21 5.35 -2.39 -0.01 1.20 16 21 H 0.06 1.88 8.12 -2.39 -0.02 1.86 16 22 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 23 H 0.05 2.23 6.19 -2.39 -0.01 2.21 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 2.46 8.06 -2.39 -0.02 2.44 16 28 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.39 16.10 5.76 -92.70 -0.53 15.57 16 30 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -73.09 248.49 4.42 -68.67 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.53 Total: 28.47 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 3.28 Total: -17.96 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -1.26 Total: -87.80 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.04 Total: -33.31 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.90 Total: 41.94 kcal Total: -73.09 4.42 -68.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306198725.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.704 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds