Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.50706 * 120.00302 * 180.02562 * 2 1 3 5 5 N 1.46896 * 109.47236 * 94.99815 * 4 2 1 6 6 C 1.47484 * 110.99908 * 265.97078 * 5 4 2 7 7 C 1.53516 * 87.93239 * 221.29914 * 6 5 4 8 8 O 1.42898 * 114.17030 * 272.37636 * 7 6 5 9 9 C 1.50698 * 114.34033 * 139.68262 * 7 6 5 10 10 H 1.07999 * 120.00554 * 266.07367 * 9 7 6 11 11 C 1.37881 * 119.99675 * 86.08107 * 9 7 6 12 12 N 1.31510 * 120.00311 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99711 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47400 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47096 * 119.99934 * 13 11 9 16 16 H 1.48500 * 109.46930 * 239.99747 * 13 11 9 17 17 C 1.47485 * 110.99871 * 170.00420 * 5 4 2 18 18 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 19 19 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 20 20 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 21 21 H 1.08999 * 109.46792 * 119.99809 * 3 2 1 22 22 H 1.08995 * 109.47689 * 240.00339 * 3 2 1 23 23 H 1.08996 * 109.46892 * 215.00324 * 4 2 1 24 24 H 1.09001 * 109.46811 * 334.99425 * 4 2 1 25 25 H 1.08999 * 113.47579 * 336.06877 * 6 5 4 26 26 H 1.09003 * 113.47494 * 106.53014 * 6 5 4 27 27 H 0.96695 * 114.00133 * 273.84157 * 8 7 6 28 28 H 0.97002 * 120.00386 * 180.02562 * 12 11 9 29 29 H 1.08999 * 113.47389 * 253.46894 * 17 5 4 30 30 H 1.09003 * 113.47240 * 23.87134 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3804 6 6 1.3968 -2.5634 -1.9647 7 6 2.5456 -3.3705 -2.5859 8 8 2.9705 -2.8945 -3.8645 9 6 2.3501 -4.8641 -2.5419 10 1 2.7628 -5.4390 -1.7261 11 6 1.6444 -5.4967 -3.5433 12 7 1.1414 -4.7968 -4.5366 13 14 1.4026 -7.3483 -3.4891 14 1 2.0619 -7.8984 -2.2775 15 1 -0.0494 -7.6569 -3.4464 16 1 2.0036 -7.9616 -4.7007 17 6 3.3499 -2.8068 -1.4062 18 1 -0.5401 0.9353 -0.0004 19 1 -0.5400 -0.9354 -0.0045 20 1 1.3551 2.1336 0.0005 21 1 2.6901 1.3628 0.8900 22 1 2.6901 1.3629 -0.8899 23 1 2.9742 -1.1991 0.5889 24 1 1.4386 -2.0856 0.4335 25 1 0.8284 -3.1200 -1.2196 26 1 0.7606 -2.0749 -2.7028 27 1 2.4622 -3.2510 -4.6058 28 1 0.6446 -5.2418 -5.2409 29 1 4.3690 -2.5246 -1.6708 30 1 3.3034 -3.4277 -0.5115 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306208012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = 1.266456 kcal Electronic energy + Delta-G solvation = -12741.208076 eV Core-core repulsion = 10538.080504 eV Total energy + Delta-G solvation = -2203.127573 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.20287 -35.59584 -33.70080 -32.03442 -28.51471 -26.96711 -25.70794 -24.79707 -22.26842 -18.63361 -18.18740 -17.12488 -15.18777 -14.97113 -14.62501 -14.45420 -13.96863 -13.27255 -12.87436 -12.65846 -11.97478 -11.95287 -11.49369 -11.33193 -11.25133 -10.96376 -10.60383 -10.47133 -10.19196 -9.92832 -9.35742 -8.80435 -8.58577 -8.13375 -7.85698 -6.26546 -4.36346 2.56395 3.18411 3.27172 3.31089 4.25285 4.93636 5.00341 5.19398 5.27479 5.71449 5.77210 5.90540 5.94048 6.01575 6.14850 6.21620 6.24970 6.35028 6.41924 6.71324 6.88960 7.07434 7.12758 7.29627 7.37610 7.77226 7.96990 8.06187 8.66188 9.33822 9.70326 10.79454 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058297 B = 0.009094 C = 0.008857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.187431 B = 3078.288799 C = 3160.548606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.113 4.113 4 C 0.047 3.953 5 N -0.466 5.466 6 C -0.018 4.018 7 C 0.246 3.754 8 O -0.570 6.570 9 C -0.534 4.534 10 H 0.067 0.933 11 C 0.070 3.930 12 N -0.898 5.898 13 Si 0.904 3.096 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.280 1.280 17 C 0.002 3.998 18 H 0.093 0.907 19 H 0.093 0.907 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.390 0.610 28 H 0.271 0.729 29 H 0.071 0.929 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 5.064 6.680 8.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.102 4.102 3 C -0.170 4.170 4 C -0.081 4.081 5 N -0.188 5.188 6 C -0.148 4.148 7 C 0.205 3.795 8 O -0.382 6.382 9 C -0.572 4.572 10 H 0.085 0.915 11 C -0.132 4.132 12 N -0.539 5.539 13 Si 0.731 3.269 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.206 1.206 17 C -0.127 4.127 18 H 0.111 0.889 19 H 0.111 0.889 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.245 0.755 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.026 6.024 6.573 8.916 hybrid contribution -0.987 -1.947 0.210 2.193 sum -0.961 4.078 6.783 7.972 Atomic orbital electron populations 1.23612 0.95283 1.01322 1.03948 1.21627 0.95097 0.95628 0.97820 1.20803 1.00022 0.93994 1.02135 1.21733 0.98687 0.94154 0.93535 1.68928 1.08841 1.27889 1.13128 1.24729 0.97316 0.93920 0.98798 1.19367 0.88053 0.90421 0.81693 1.86025 1.62728 1.72643 1.16842 1.21630 1.34412 0.92289 1.08903 0.91513 1.25076 0.94070 0.99206 0.94841 1.69307 1.36520 1.36075 1.11949 0.86345 0.77937 0.84300 0.78288 1.19584 1.20755 1.20621 1.24078 0.98182 0.91384 0.99027 0.88913 0.88850 0.92688 0.92245 0.90931 0.91450 0.93683 0.92462 0.91441 0.75455 0.91874 0.91088 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.12 13.90 29.02 0.40 -2.71 16 2 C -0.10 -1.64 5.64 -101.06 -0.57 -2.21 16 3 C -0.11 -1.55 10.12 36.01 0.36 -1.18 16 4 C 0.05 0.85 4.98 -4.98 -0.02 0.82 16 5 N -0.47 -10.10 6.32 -246.06 -1.55 -11.65 16 6 C -0.02 -0.44 7.13 -7.54 -0.05 -0.49 16 7 C 0.25 6.39 1.56 -91.24 -0.14 6.25 16 8 O -0.57 -15.83 13.53 -35.23 -0.48 -16.31 16 9 C -0.53 -14.42 8.70 -34.44 -0.30 -14.72 16 10 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 11 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 12 N -0.90 -24.34 11.02 55.43 0.61 -23.73 16 13 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C 0.00 0.05 7.09 -7.54 -0.05 -0.01 16 18 H 0.09 1.23 7.83 -52.49 -0.41 0.82 16 19 H 0.09 1.47 7.99 -52.48 -0.42 1.05 16 20 H 0.05 0.66 7.78 -51.92 -0.40 0.25 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.07 1.10 8.08 -51.93 -0.42 0.69 16 24 H 0.04 0.81 7.15 -51.93 -0.37 0.44 16 25 H 0.06 1.34 7.38 -51.93 -0.38 0.96 16 26 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 27 H 0.39 10.96 6.33 45.56 0.29 11.25 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.06 1.31 7.87 -51.93 -0.41 0.91 16 LS Contribution 255.36 15.07 3.85 3.85 Total: -1.00 -27.91 255.36 -6.83 -34.74 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -3.76 Total: 10.15 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.47 Total: -12.48 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.94 Total: -35.38 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.48 Total: -16.31 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.91 -6.83 -34.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306208012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.009 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds