Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.50706 * 120.00302 * 180.02562 * 2 1 3 5 5 N 1.46896 * 109.47236 * 94.99815 * 4 2 1 6 6 C 1.47484 * 110.99908 * 265.97078 * 5 4 2 7 7 C 1.53516 * 87.93239 * 221.29914 * 6 5 4 8 8 O 1.42898 * 114.17030 * 272.37636 * 7 6 5 9 9 C 1.50698 * 114.34033 * 139.68262 * 7 6 5 10 10 H 1.07999 * 120.00554 * 266.07367 * 9 7 6 11 11 C 1.37881 * 119.99675 * 86.08107 * 9 7 6 12 12 N 1.31510 * 120.00311 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99711 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47400 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47096 * 119.99934 * 13 11 9 16 16 H 1.48500 * 109.46930 * 239.99747 * 13 11 9 17 17 C 1.47485 * 110.99871 * 170.00420 * 5 4 2 18 18 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 19 19 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 20 20 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 21 21 H 1.08999 * 109.46792 * 119.99809 * 3 2 1 22 22 H 1.08995 * 109.47689 * 240.00339 * 3 2 1 23 23 H 1.08996 * 109.46892 * 215.00324 * 4 2 1 24 24 H 1.09001 * 109.46811 * 334.99425 * 4 2 1 25 25 H 1.08999 * 113.47579 * 336.06877 * 6 5 4 26 26 H 1.09003 * 113.47494 * 106.53014 * 6 5 4 27 27 H 0.96695 * 114.00133 * 273.84157 * 8 7 6 28 28 H 0.97002 * 120.00386 * 180.02562 * 12 11 9 29 29 H 1.08999 * 113.47389 * 253.46894 * 17 5 4 30 30 H 1.09003 * 113.47240 * 23.87134 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3804 6 6 1.3968 -2.5634 -1.9647 7 6 2.5456 -3.3705 -2.5859 8 8 2.9705 -2.8945 -3.8645 9 6 2.3501 -4.8641 -2.5419 10 1 2.7628 -5.4390 -1.7261 11 6 1.6444 -5.4967 -3.5433 12 7 1.1414 -4.7968 -4.5366 13 14 1.4026 -7.3483 -3.4891 14 1 2.0619 -7.8984 -2.2775 15 1 -0.0494 -7.6569 -3.4464 16 1 2.0036 -7.9616 -4.7007 17 6 3.3499 -2.8068 -1.4062 18 1 -0.5401 0.9353 -0.0004 19 1 -0.5400 -0.9354 -0.0045 20 1 1.3551 2.1336 0.0005 21 1 2.6901 1.3628 0.8900 22 1 2.6901 1.3629 -0.8899 23 1 2.9742 -1.1991 0.5889 24 1 1.4386 -2.0856 0.4335 25 1 0.8284 -3.1200 -1.2196 26 1 0.7606 -2.0749 -2.7028 27 1 2.4622 -3.2510 -4.6058 28 1 0.6446 -5.2418 -5.2409 29 1 4.3690 -2.5246 -1.6708 30 1 3.3034 -3.4277 -0.5115 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306208012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = -19.720409 kcal Electronic energy + Delta-G solvation = -12742.118135 eV Core-core repulsion = 10538.080504 eV Total energy + Delta-G solvation = -2204.037631 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.99986 -37.12870 -35.46377 -34.10605 -30.22451 -28.12958 -27.54102 -26.63538 -24.00557 -20.53298 -19.68602 -18.95394 -17.16678 -16.78905 -16.14336 -16.00000 -15.71449 -14.85771 -14.34290 -14.11024 -13.77405 -13.54459 -13.40155 -12.99650 -12.75449 -12.52312 -12.30740 -12.26154 -11.81988 -11.70354 -11.21743 -10.68450 -10.19234 -9.92228 -9.64906 -8.26829 -6.45047 1.32127 1.40648 1.43639 1.55134 2.36278 2.94017 3.31475 3.83311 3.92248 4.13764 4.22686 4.32743 4.46650 4.60143 4.68710 4.77253 4.86453 4.91334 5.01612 5.12662 5.16060 5.36939 5.39146 5.71446 5.73854 5.94933 6.01587 6.31911 6.61404 7.28314 7.54261 8.78710 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058297 B = 0.009094 C = 0.008857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.187431 B = 3078.288799 C = 3160.548606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.109 4.109 4 C 0.045 3.955 5 N -0.470 5.470 6 C -0.005 4.005 7 C 0.217 3.783 8 O -0.583 6.583 9 C -0.558 4.558 10 H 0.067 0.933 11 C 0.025 3.975 12 N -0.920 5.920 13 Si 0.971 3.029 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.011 3.989 18 H 0.116 0.884 19 H 0.084 0.916 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.383 0.617 28 H 0.275 0.725 29 H 0.072 0.928 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 5.096 7.804 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.120 4.120 3 C -0.165 4.165 4 C -0.083 4.083 5 N -0.192 5.192 6 C -0.135 4.135 7 C 0.176 3.824 8 O -0.395 6.395 9 C -0.596 4.596 10 H 0.085 0.915 11 C -0.175 4.175 12 N -0.562 5.562 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.117 4.117 18 H 0.134 0.866 19 H 0.102 0.898 20 H 0.092 0.908 21 H 0.095 0.905 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.238 0.762 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.109 6.071 7.712 9.816 hybrid contribution -0.960 -1.916 -0.126 2.147 sum -1.069 4.155 7.586 8.715 Atomic orbital electron populations 1.23801 0.95222 1.02063 1.02575 1.21762 0.95513 0.95779 0.98982 1.20796 1.00259 0.93220 1.02246 1.21809 0.99886 0.95205 0.91355 1.68846 1.07556 1.26909 1.15848 1.24469 0.96774 0.93894 0.98371 1.19755 0.90228 0.90645 0.81755 1.86006 1.63029 1.72897 1.17590 1.21885 1.35094 0.93142 1.09452 0.91454 1.25867 0.93602 1.03617 0.94397 1.69383 1.36674 1.37734 1.12369 0.85312 0.77920 0.78849 0.78356 1.19040 1.20246 1.20275 1.23996 0.97997 0.91650 0.98090 0.86571 0.89798 0.90844 0.90503 0.92373 0.89657 0.93800 0.92362 0.93635 0.76180 0.91533 0.90958 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.69 13.90 67.79 0.94 -4.75 16 2 C -0.12 -3.63 5.64 -16.48 -0.09 -3.73 16 3 C -0.11 -2.70 10.12 71.24 0.72 -1.98 16 4 C 0.05 1.55 4.98 85.56 0.43 1.98 16 5 N -0.47 -20.00 6.32 -932.78 -5.89 -25.89 16 6 C -0.01 -0.26 7.13 83.58 0.60 0.34 16 7 C 0.22 11.33 1.56 -11.20 -0.02 11.32 16 8 O -0.58 -32.96 13.53 -148.98 -2.02 -34.98 16 9 C -0.56 -30.11 8.70 25.60 0.22 -29.88 16 10 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 11 C 0.02 1.31 5.39 84.66 0.46 1.76 16 12 N -0.92 -50.24 11.02 21.45 0.24 -50.00 16 13 Si 0.97 41.60 29.54 68.60 2.03 43.63 16 14 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 15 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 17 C 0.01 0.50 7.09 83.57 0.59 1.10 16 18 H 0.12 2.75 7.83 -2.91 -0.02 2.73 16 19 H 0.08 2.54 7.99 -2.91 -0.02 2.51 16 20 H 0.07 1.54 7.78 -2.38 -0.02 1.52 16 21 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.09 2.60 8.08 -2.39 -0.02 2.58 16 24 H 0.04 1.51 7.15 -2.39 -0.02 1.49 16 25 H 0.06 2.73 7.38 -2.39 -0.02 2.71 16 26 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.38 22.13 6.33 -74.06 -0.47 21.66 16 28 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.08 3.18 7.87 -2.39 -0.02 3.16 16 Total: -1.00 -58.35 255.36 -1.15 -59.50 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.64 Total: 31.59 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.85 Total: -23.85 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -5.66 Total: -75.89 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -2.02 Total: -34.98 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -58.35 -1.15 -59.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306208012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.781 kcal (2) G-P(sol) polarization free energy of solvation -58.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds