Wall clock time and date at job start Mon Mar 30 2020 02:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.70367 * 2 1 4 4 C 1.53299 * 109.71069 * 239.36928 * 2 1 3 5 5 N 1.46830 * 109.39437 * 186.52106 * 4 2 1 6 6 C 1.46903 * 110.99710 * 189.75177 * 5 4 2 7 7 C 1.46823 * 111.57132 * 65.38990 * 5 4 2 8 8 C 1.53306 * 109.39592 * 294.61088 * 7 5 4 9 9 H 1.09000 * 109.70657 * 294.06159 * 8 7 5 10 10 C 1.50698 * 109.70804 * 173.47611 * 8 7 5 11 11 H 1.08006 * 120.00237 * 0.02562 * 10 8 7 12 12 C 1.37876 * 120.00243 * 179.97438 * 10 8 7 13 13 N 1.31517 * 119.99635 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00447 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.46892 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47365 * 120.00074 * 14 12 10 17 17 H 1.48498 * 109.47060 * 240.00187 * 14 12 10 18 18 C 1.51431 * 108.24139 * 53.79357 * 8 7 5 19 19 O 1.20758 * 121.11282 * 130.95738 * 18 8 7 20 20 H 1.08997 * 109.47272 * 299.41575 * 1 2 3 21 21 H 1.08999 * 109.46564 * 59.42140 * 1 2 3 22 22 H 1.09001 * 109.46926 * 179.41536 * 1 2 3 23 23 H 1.09001 * 109.48097 * 306.49339 * 4 2 1 24 24 H 1.08997 * 109.48460 * 66.54484 * 4 2 1 25 25 H 1.09007 * 109.47300 * 291.36317 * 6 5 4 26 26 H 1.09010 * 109.47019 * 51.35655 * 6 5 4 27 27 H 1.08994 * 109.47283 * 171.35991 * 6 5 4 28 28 H 1.08992 * 109.48711 * 174.62923 * 7 5 4 29 29 H 1.09004 * 109.48274 * 54.58179 * 7 5 4 30 30 H 0.97005 * 120.00126 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0471 -0.7353 -1.2418 5 7 3.5069 -0.8681 -1.1573 6 6 4.0653 -1.3568 -2.4251 7 6 3.9066 -1.7313 -0.0389 8 6 3.5157 -1.0636 1.2846 9 1 4.0974 -0.1521 1.4223 10 6 3.7760 -2.0103 2.4278 11 1 4.1809 -2.9927 2.2340 12 6 3.4983 -1.6221 3.7213 13 7 3.0057 -0.4257 3.9574 14 14 3.8216 -2.7954 5.1385 15 1 4.3723 -4.0694 4.6105 16 1 4.7986 -2.1835 6.0746 17 1 2.5505 -3.0661 5.8568 18 6 2.0407 -0.7254 1.2274 19 8 1.2966 -1.0243 2.1302 20 1 -0.3633 0.5047 0.8951 21 1 -0.3632 0.5228 -0.8848 22 1 -0.3633 -1.0276 -0.0105 23 1 1.5943 -1.7255 -1.2927 24 1 1.7847 -0.1688 -2.1353 25 1 3.7597 -2.3914 -2.5819 26 1 3.6971 -0.7409 -3.2457 27 1 5.1532 -1.3009 -2.3885 28 1 4.9855 -1.8834 -0.0646 29 1 3.4014 -2.6935 -0.1237 30 1 2.8107 -0.1524 4.8674 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306503726.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:22 Heat of formation + Delta-G solvation = -36.488648 kcal Electronic energy + Delta-G solvation = -13142.284246 eV Core-core repulsion = 10937.519489 eV Total energy + Delta-G solvation = -2204.764757 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.93312 -36.29967 -33.25316 -32.22515 -30.22168 -26.56800 -25.31258 -24.01463 -21.34373 -20.77463 -17.85933 -16.34400 -15.15740 -14.82822 -14.56432 -14.36460 -13.83384 -13.46924 -12.78972 -12.23730 -12.12931 -11.92033 -11.60537 -11.34128 -11.16276 -10.93448 -10.71320 -10.50260 -10.41272 -10.26167 -9.51726 -9.18946 -8.34687 -7.81956 -7.72047 -5.96077 -3.99490 3.36034 3.43728 3.46355 3.69170 4.39702 4.55626 5.14960 5.41935 5.50625 5.55703 5.72326 5.79917 5.83225 5.97445 6.07902 6.10149 6.19646 6.30082 6.40721 6.59073 6.68735 6.76876 7.30623 7.41903 7.57010 7.68235 7.96800 8.31511 8.96288 9.35268 9.66814 11.15526 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042178 B = 0.013191 C = 0.010717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.690496 B = 2122.197207 C = 2612.084976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 H 0.095 0.905 4 C 0.075 3.925 5 N -0.551 5.551 6 C 0.028 3.972 7 C 0.072 3.928 8 C 0.013 3.987 9 H 0.063 0.937 10 C -0.530 4.530 11 H 0.058 0.942 12 C 0.081 3.919 13 N -0.869 5.869 14 Si 0.894 3.106 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.360 3.640 19 O -0.423 6.423 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.019 0.981 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 0.092 -9.999 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 H 0.113 0.887 4 C -0.053 4.053 5 N -0.275 5.275 6 C -0.120 4.120 7 C -0.055 4.055 8 C -0.006 4.006 9 H 0.081 0.919 10 C -0.568 4.568 11 H 0.076 0.924 12 C -0.124 4.124 13 N -0.505 5.505 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.210 1.210 18 C 0.231 3.769 19 O -0.292 6.292 20 H 0.080 0.920 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.985 0.502 -9.273 9.339 hybrid contribution -0.168 -1.238 0.544 1.362 sum -1.154 -0.735 -8.729 8.836 Atomic orbital electron populations 1.21556 0.94587 1.01681 1.01169 1.22123 0.95955 1.01793 0.97063 0.88702 1.21977 0.87599 0.98472 0.97263 1.61836 1.10028 1.51702 1.03926 1.22304 1.00409 0.97544 0.91766 1.22242 0.99931 0.93204 0.90158 1.19405 0.91563 0.98228 0.91372 0.91891 1.20757 1.45143 1.00495 0.90381 0.92370 1.24849 0.93831 0.94966 0.98725 1.69931 1.41652 1.18567 1.20354 0.86520 0.77715 0.81176 0.82413 1.19828 1.21087 1.21022 1.25273 0.92645 0.75119 0.83890 1.90217 1.59643 1.42512 1.36809 0.92014 0.93331 0.93021 0.95252 0.91273 0.96250 0.92118 0.91571 0.91147 0.95603 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.64 37.16 0.32 -1.95 16 2 C -0.15 -2.90 3.17 -91.25 -0.29 -3.19 16 3 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 4 C 0.08 1.27 4.81 -3.71 -0.02 1.25 16 5 N -0.55 -9.80 4.83 -242.64 -1.17 -10.97 16 6 C 0.03 0.39 9.60 60.07 0.58 0.97 16 7 C 0.07 1.49 4.75 -3.71 -0.02 1.47 16 8 C 0.01 0.34 2.53 -92.41 -0.23 0.11 16 9 H 0.06 1.71 8.14 -51.93 -0.42 1.28 16 10 C -0.53 -14.92 8.31 -34.44 -0.29 -15.21 16 11 H 0.06 1.60 7.75 -52.48 -0.41 1.20 16 12 C 0.08 2.35 4.76 -17.82 -0.08 2.27 16 13 N -0.87 -26.19 11.45 55.43 0.63 -25.56 16 14 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 18 C 0.36 8.96 6.05 -28.31 -0.17 8.79 16 19 O -0.42 -12.06 13.97 6.00 0.08 -11.98 16 20 H 0.06 1.13 8.03 -51.93 -0.42 0.72 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.03 0.50 8.10 -51.93 -0.42 0.08 16 24 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.72 7.96 -51.92 -0.41 0.31 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 29 H 0.03 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 246.85 15.07 3.72 3.72 Total: -1.00 -31.25 246.85 -6.54 -37.79 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -4.58 Total: -4.73 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.20 Total: -5.49 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.54 Total: -36.53 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.25 -6.54 -37.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306503726.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.299 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds