Wall clock time and date at job start Mon Mar 30 2020 02:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.70367 * 2 1 4 4 C 1.53299 * 109.71069 * 239.36928 * 2 1 3 5 5 N 1.46830 * 109.39437 * 186.52106 * 4 2 1 6 6 C 1.46903 * 110.99710 * 189.75177 * 5 4 2 7 7 C 1.46823 * 111.57132 * 65.38990 * 5 4 2 8 8 C 1.53306 * 109.39592 * 294.61088 * 7 5 4 9 9 H 1.09000 * 109.70657 * 294.06159 * 8 7 5 10 10 C 1.50698 * 109.70804 * 173.47611 * 8 7 5 11 11 H 1.08006 * 120.00237 * 0.02562 * 10 8 7 12 12 C 1.37876 * 120.00243 * 179.97438 * 10 8 7 13 13 N 1.31517 * 119.99635 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00447 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.46892 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47365 * 120.00074 * 14 12 10 17 17 H 1.48498 * 109.47060 * 240.00187 * 14 12 10 18 18 C 1.51431 * 108.24139 * 53.79357 * 8 7 5 19 19 O 1.20758 * 121.11282 * 130.95738 * 18 8 7 20 20 H 1.08997 * 109.47272 * 299.41575 * 1 2 3 21 21 H 1.08999 * 109.46564 * 59.42140 * 1 2 3 22 22 H 1.09001 * 109.46926 * 179.41536 * 1 2 3 23 23 H 1.09001 * 109.48097 * 306.49339 * 4 2 1 24 24 H 1.08997 * 109.48460 * 66.54484 * 4 2 1 25 25 H 1.09007 * 109.47300 * 291.36317 * 6 5 4 26 26 H 1.09010 * 109.47019 * 51.35655 * 6 5 4 27 27 H 1.08994 * 109.47283 * 171.35991 * 6 5 4 28 28 H 1.08992 * 109.48711 * 174.62923 * 7 5 4 29 29 H 1.09004 * 109.48274 * 54.58179 * 7 5 4 30 30 H 0.97005 * 120.00126 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0471 -0.7353 -1.2418 5 7 3.5069 -0.8681 -1.1573 6 6 4.0653 -1.3568 -2.4251 7 6 3.9066 -1.7313 -0.0389 8 6 3.5157 -1.0636 1.2846 9 1 4.0974 -0.1521 1.4223 10 6 3.7760 -2.0103 2.4278 11 1 4.1809 -2.9927 2.2340 12 6 3.4983 -1.6221 3.7213 13 7 3.0057 -0.4257 3.9574 14 14 3.8216 -2.7954 5.1385 15 1 4.3723 -4.0694 4.6105 16 1 4.7986 -2.1835 6.0746 17 1 2.5505 -3.0661 5.8568 18 6 2.0407 -0.7254 1.2274 19 8 1.2966 -1.0243 2.1302 20 1 -0.3633 0.5047 0.8951 21 1 -0.3632 0.5228 -0.8848 22 1 -0.3633 -1.0276 -0.0105 23 1 1.5943 -1.7255 -1.2927 24 1 1.7847 -0.1688 -2.1353 25 1 3.7597 -2.3914 -2.5819 26 1 3.6971 -0.7409 -3.2457 27 1 5.1532 -1.3009 -2.3885 28 1 4.9855 -1.8834 -0.0646 29 1 3.4014 -2.6935 -0.1237 30 1 2.8107 -0.1524 4.8674 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306503726.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:22 Heat of formation + Delta-G solvation = -58.308289 kcal Electronic energy + Delta-G solvation = -13143.230417 eV Core-core repulsion = 10937.519489 eV Total energy + Delta-G solvation = -2205.710927 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.67444 -37.99241 -35.20533 -33.88315 -32.11189 -27.88391 -27.13075 -25.72606 -22.97331 -22.40367 -19.61802 -18.46214 -16.89499 -16.45361 -16.28298 -16.13441 -15.37570 -15.15492 -14.59687 -13.99316 -13.59700 -13.27834 -13.09688 -12.97666 -12.85521 -12.69641 -12.56551 -12.34095 -11.99190 -11.78301 -11.49467 -11.18295 -10.54501 -9.63422 -9.20593 -8.15100 -6.23777 1.36657 1.39441 1.49779 1.76665 2.41741 3.07485 3.19131 3.67598 4.04329 4.16586 4.31124 4.42294 4.50891 4.63744 4.69643 4.79629 4.84841 4.85872 5.06693 5.09751 5.15860 5.29951 5.42437 5.56694 5.73326 6.04109 6.22888 6.31414 6.79265 7.41686 7.46774 8.96082 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042178 B = 0.013191 C = 0.010717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.690496 B = 2122.197207 C = 2612.084976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.143 4.143 3 H 0.101 0.899 4 C 0.079 3.921 5 N -0.561 5.561 6 C 0.028 3.972 7 C 0.087 3.913 8 C 0.000 4.000 9 H 0.037 0.963 10 C -0.546 4.546 11 H 0.057 0.943 12 C 0.027 3.973 13 N -0.902 5.902 14 Si 0.954 3.046 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.290 1.290 18 C 0.350 3.650 19 O -0.470 6.470 20 H 0.041 0.959 21 H 0.092 0.908 22 H 0.044 0.956 23 H 0.028 0.972 24 H 0.112 0.888 25 H 0.025 0.975 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.018 0.982 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -0.118 -12.039 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 H 0.119 0.881 4 C -0.049 4.049 5 N -0.285 5.285 6 C -0.120 4.120 7 C -0.041 4.041 8 C -0.019 4.019 9 H 0.055 0.945 10 C -0.584 4.584 11 H 0.075 0.925 12 C -0.174 4.174 13 N -0.539 5.539 14 Si 0.780 3.220 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.216 1.216 18 C 0.224 3.776 19 O -0.342 6.342 20 H 0.060 0.940 21 H 0.111 0.889 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.130 0.870 25 H 0.044 0.956 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.036 0.964 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.931 0.288 -11.352 11.394 hybrid contribution -0.143 -1.150 1.120 1.612 sum -1.074 -0.862 -10.232 10.325 Atomic orbital electron populations 1.21520 0.92789 1.01707 1.02290 1.22066 0.97522 1.01384 0.95236 0.88118 1.22051 0.86946 0.98699 0.97239 1.61773 1.10804 1.51199 1.04716 1.22417 1.00874 0.98413 0.90273 1.21929 1.00151 0.92682 0.89375 1.19430 0.92287 0.96935 0.93281 0.94528 1.21181 1.44548 1.00904 0.91759 0.92523 1.25671 0.93813 0.96484 1.01439 1.70057 1.43070 1.20302 1.20513 0.85569 0.77399 0.79649 0.79381 1.18608 1.19968 1.21612 1.25775 0.92255 0.74480 0.85096 1.90187 1.60509 1.44609 1.38942 0.94018 0.88935 0.93650 0.95357 0.87015 0.95611 0.89256 0.90848 0.90560 0.96381 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.64 71.98 0.62 -3.44 16 2 C -0.14 -5.30 3.17 -11.20 -0.04 -5.33 16 3 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 4 C 0.08 2.39 4.81 86.42 0.42 2.81 16 5 N -0.56 -18.46 4.83 -921.59 -4.45 -22.91 16 6 C 0.03 0.66 9.60 127.69 1.23 1.88 16 7 C 0.09 3.52 4.75 86.42 0.41 3.93 16 8 C 0.00 0.00 2.53 -11.95 -0.03 -0.03 16 9 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 10 C -0.55 -31.41 8.31 25.60 0.21 -31.20 16 11 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 12 C 0.03 1.62 4.76 84.65 0.40 2.02 16 13 N -0.90 -56.05 11.45 21.45 0.25 -55.80 16 14 Si 0.95 46.41 29.54 68.60 2.03 48.44 16 15 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 17 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 18 C 0.35 17.65 6.05 29.57 0.18 17.83 16 19 O -0.47 -27.61 13.97 -1.44 -0.02 -27.63 16 20 H 0.04 1.50 8.03 -2.39 -0.02 1.48 16 21 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.03 0.88 8.10 -2.39 -0.02 0.86 16 24 H 0.11 2.54 7.95 -2.39 -0.02 2.52 16 25 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.09 1.66 7.96 -2.38 -0.02 1.64 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 2.95 8.08 -2.39 -0.02 2.93 16 29 H 0.02 0.75 8.10 -2.38 -0.02 0.73 16 30 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -69.35 246.85 2.30 -67.05 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: 1.10 Total: 2.39 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 3.40 Total: -11.54 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -4.20 Total: -78.71 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.02 Total: -27.63 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -69.35 2.30 -67.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306503726.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.740 kcal (2) G-P(sol) polarization free energy of solvation -69.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds