Wall clock time and date at job start Mon Mar 30 2020 02:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.70518 * 2 1 4 4 C 1.53298 * 109.70958 * 120.59035 * 2 1 3 5 5 N 1.46825 * 109.40093 * 65.89157 * 4 2 1 6 6 C 1.46904 * 111.00178 * 189.75161 * 5 4 2 7 7 C 1.46831 * 111.56659 * 65.38732 * 5 4 2 8 8 C 1.53294 * 109.39835 * 294.61392 * 7 5 4 9 9 H 1.09002 * 109.71293 * 294.10277 * 8 7 5 10 10 C 1.50696 * 109.71071 * 173.48004 * 8 7 5 11 11 H 1.08000 * 120.00196 * 359.97438 * 10 8 7 12 12 C 1.37885 * 120.00269 * 180.02562 * 10 8 7 13 13 N 1.31509 * 119.99969 * 179.97438 * 12 10 8 14 14 Si 1.86800 * 119.99824 * 359.97438 * 12 10 8 15 15 H 1.48503 * 109.46759 * 90.00389 * 14 12 10 16 16 H 1.48499 * 109.46944 * 210.00164 * 14 12 10 17 17 H 1.48493 * 109.47069 * 330.00385 * 14 12 10 18 18 C 1.51434 * 109.70669 * 239.37432 * 2 1 3 19 19 O 1.20764 * 121.11196 * 109.31733 * 18 2 1 20 20 H 1.09001 * 109.47002 * 299.40949 * 1 2 3 21 21 H 1.08993 * 109.46955 * 59.41386 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.41215 * 1 2 3 23 23 H 1.09002 * 109.48370 * 185.87059 * 4 2 1 24 24 H 1.09002 * 109.48529 * 305.91192 * 4 2 1 25 25 H 1.09000 * 109.46462 * 60.00161 * 6 5 4 26 26 H 1.08993 * 109.47160 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47152 * 300.00382 * 6 5 4 28 28 H 1.09003 * 109.48077 * 54.59061 * 7 5 4 29 29 H 1.08996 * 109.48522 * 174.61794 * 7 5 4 30 30 H 0.97001 * 120.00513 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0471 -0.7344 1.2423 5 7 1.6790 -2.1533 1.1585 6 6 1.9500 -2.8434 2.4268 7 6 2.3569 -2.8216 0.0406 8 6 1.8610 -2.2289 -1.2832 9 1 0.8065 -2.4680 -1.4210 10 6 2.6645 -2.7943 -2.4259 11 1 3.4528 -3.5064 -2.2315 12 6 2.3940 -2.4016 -3.7197 13 7 3.0955 -2.8946 -4.7168 14 14 1.0310 -1.1693 -4.0561 15 1 1.5877 0.2069 -4.0186 16 1 0.4470 -1.4307 -5.3962 17 1 -0.0251 -1.3045 -3.0209 18 6 2.0407 -0.7263 -1.2268 19 8 2.5731 -0.1272 -2.1301 20 1 -0.3633 0.5046 0.8952 21 1 -0.3633 0.5229 -0.8846 22 1 -0.3633 -1.0276 -0.0105 23 1 3.1320 -0.6427 1.2937 24 1 1.6023 -0.2956 2.1355 25 1 1.3704 -2.3784 3.2243 26 1 1.6679 -3.8923 2.3372 27 1 3.0123 -2.7710 2.6600 28 1 3.4332 -2.6711 0.1258 29 1 2.1359 -3.8886 0.0669 30 1 2.9050 -2.6187 -5.6270 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306503728.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:24 Heat of formation + Delta-G solvation = -54.830433 kcal Electronic energy + Delta-G solvation = -13320.624443 eV Core-core repulsion = 11115.064327 eV Total energy + Delta-G solvation = -2205.560116 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.16997 -38.40707 -35.17724 -34.09012 -32.63006 -27.91768 -27.37364 -25.62286 -23.21829 -22.83613 -19.34951 -19.10399 -17.24283 -16.58527 -16.45370 -15.87030 -15.69035 -15.57912 -14.91732 -14.71391 -13.96759 -13.37048 -13.21134 -13.15927 -13.00193 -12.66805 -12.42269 -12.10743 -11.87155 -11.76569 -11.57232 -11.47193 -10.89166 -9.99754 -9.24860 -8.35119 -6.43326 1.06087 1.23676 1.41393 1.45043 2.32845 2.94494 3.03617 3.44058 3.92570 4.03877 4.11670 4.31926 4.40283 4.59913 4.66001 4.72500 4.79005 4.83491 4.97579 5.04141 5.11458 5.13011 5.28609 5.40707 5.50326 6.04624 6.12005 6.23118 6.61239 6.80640 7.27020 8.78648 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043428 B = 0.015615 C = 0.012972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.591048 B = 1792.712029 C = 2157.922381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.137 4.137 3 H 0.098 0.902 4 C 0.072 3.928 5 N -0.550 5.550 6 C 0.027 3.973 7 C 0.091 3.909 8 C -0.029 4.029 9 H 0.071 0.929 10 C -0.524 4.524 11 H 0.041 0.959 12 C 0.033 3.967 13 N -0.944 5.944 14 Si 0.942 3.058 15 H -0.275 1.275 16 H -0.301 1.301 17 H -0.244 1.244 18 C 0.331 3.669 19 O -0.481 6.481 20 H 0.098 0.902 21 H 0.038 0.962 22 H 0.066 0.934 23 H 0.029 0.971 24 H 0.120 0.880 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.017 0.983 29 H 0.083 0.917 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 4.465 15.722 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 H 0.116 0.884 4 C -0.056 4.056 5 N -0.275 5.275 6 C -0.120 4.120 7 C -0.037 4.037 8 C -0.049 4.049 9 H 0.088 0.912 10 C -0.562 4.562 11 H 0.059 0.941 12 C -0.166 4.166 13 N -0.583 5.583 14 Si 0.771 3.229 15 H -0.202 1.202 16 H -0.229 1.229 17 H -0.168 1.168 18 C 0.209 3.791 19 O -0.357 6.357 20 H 0.117 0.883 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.047 0.953 24 H 0.138 0.862 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.883 4.730 15.022 17.188 hybrid contribution 0.899 0.320 -0.896 1.309 sum -5.984 5.050 14.127 16.152 Atomic orbital electron populations 1.21619 0.90823 1.03355 1.02612 1.22139 0.99760 0.99914 0.93855 0.88420 1.22136 0.97959 0.88134 0.97397 1.61792 1.58667 1.02485 1.04521 1.22423 0.99557 0.99869 0.90155 1.21797 0.94599 0.98758 0.88556 1.19892 0.99019 0.91018 0.94936 0.91167 1.20994 1.18471 1.25787 0.90907 0.94055 1.25760 0.98256 0.96531 0.96008 1.70008 1.42683 1.45645 0.99997 0.85883 0.79403 0.80364 0.77257 1.20221 1.22946 1.16792 1.26398 0.72721 0.93931 0.86020 1.90228 1.34300 1.71465 1.39746 0.88290 0.94262 0.91462 0.95321 0.86150 0.88874 0.90844 0.95701 0.96510 0.89863 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.05 71.98 0.65 -2.77 16 2 C -0.14 -4.35 3.22 -11.20 -0.04 -4.38 16 3 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 4 C 0.07 1.87 4.90 86.42 0.42 2.30 16 5 N -0.55 -15.73 4.34 -921.62 -4.00 -19.73 16 6 C 0.03 0.57 9.57 127.69 1.22 1.79 16 7 C 0.09 3.44 4.75 86.41 0.41 3.85 16 8 C -0.03 -1.36 1.88 -11.95 -0.02 -1.38 16 9 H 0.07 3.27 6.93 -2.39 -0.02 3.25 16 10 C -0.52 -31.11 8.89 25.60 0.23 -30.88 16 11 H 0.04 2.66 7.99 -2.91 -0.02 2.63 16 12 C 0.03 2.06 5.15 84.66 0.44 2.49 16 13 N -0.94 -62.35 13.96 21.45 0.30 -62.05 16 14 Si 0.94 49.97 24.15 68.60 1.66 51.63 16 15 H -0.28 -15.17 6.25 99.48 0.62 -14.55 16 16 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 17 H -0.24 -11.57 6.52 99.48 0.65 -10.92 16 18 C 0.33 14.93 4.62 29.57 0.14 15.06 16 19 O -0.48 -25.91 12.66 -1.46 -0.02 -25.93 16 20 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.94 7.39 -2.39 -0.02 1.92 16 23 H 0.03 0.79 8.10 -2.39 -0.02 0.77 16 24 H 0.12 2.18 8.07 -2.39 -0.02 2.16 16 25 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 26 H 0.07 1.46 8.04 -2.39 -0.02 1.44 16 27 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.02 0.68 8.10 -2.39 -0.02 0.66 16 29 H 0.08 3.02 8.01 -2.39 -0.02 3.00 16 30 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 Total: -1.00 -73.41 238.64 2.34 -71.06 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: 0.96 Total: -1.05 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 3.45 Total: -13.94 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -3.70 Total: -81.78 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.02 Total: -25.93 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.66 Total: 51.63 kcal Total: -73.41 2.34 -71.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306503728.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.233 kcal (2) G-P(sol) polarization free energy of solvation -73.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds