Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46784 * 2 1 4 4 C 1.50693 * 109.47307 * 239.99787 * 2 1 3 5 5 H 1.07998 * 120.00085 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99793 * 59.99639 * 4 2 1 7 7 N 1.31513 * 120.00335 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00008 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.46840 * 60.00104 * 8 6 4 10 10 H 1.48498 * 109.47442 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47321 * 300.00713 * 8 6 4 12 12 N 1.46899 * 109.47071 * 119.99423 * 2 1 3 13 13 C 1.48103 * 111.00395 * 300.00404 * 12 2 1 14 14 C 1.53217 * 85.93079 * 222.90650 * 13 12 2 15 15 C 1.52618 * 120.92608 * 258.57688 * 14 13 12 16 16 C 1.53505 * 81.00155 * 207.53590 * 15 14 13 17 17 O 1.42505 * 121.07027 * 148.26418 * 14 13 12 18 18 C 1.48110 * 110.99865 * 200.45187 * 12 2 1 19 19 H 1.08998 * 109.47516 * 60.00401 * 1 2 3 20 20 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47109 * 299.99742 * 1 2 3 22 22 H 0.96995 * 120.00310 * 180.02562 * 7 6 4 23 23 H 1.08994 * 113.80010 * 108.65189 * 13 12 2 24 24 H 1.09005 * 113.90351 * 337.17099 * 13 12 2 25 25 H 1.09000 * 114.61311 * 320.55945 * 15 14 13 26 26 H 1.09005 * 114.60574 * 94.46663 * 15 14 13 27 27 H 1.08999 * 113.35385 * 270.76031 * 16 15 14 28 28 H 1.08999 * 113.35128 * 140.68186 * 16 15 14 29 29 H 1.08999 * 113.79930 * 22.84961 * 18 12 2 30 30 H 1.08998 * 113.80345 * 251.34706 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8279 -0.4194 -5.2204 11 1 3.8075 -1.1190 -4.0076 12 7 2.0197 -0.6924 1.1995 13 6 1.5448 -0.0208 2.4311 14 6 2.9667 -0.2294 2.9624 15 6 3.2804 -1.3567 3.9422 16 6 4.3820 -0.3692 4.3516 17 8 3.5581 0.7007 3.8657 18 6 3.4181 -0.3082 1.5004 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.7088 1.1612 -3.4844 23 1 0.7854 -0.5835 2.9740 24 1 1.2778 1.0264 2.2883 25 1 2.5162 -1.5244 4.7011 26 1 3.6420 -2.2742 3.4777 27 1 5.3058 -0.4939 3.7867 28 1 4.5496 -0.3309 5.4280 29 1 3.7107 0.6531 1.0781 30 1 4.1430 -1.0986 1.3060 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306538785.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = 29.251274 kcal Electronic energy + Delta-G solvation = -12871.917311 eV Core-core repulsion = 10670.003251 eV Total energy + Delta-G solvation = -2201.914060 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.06220 -37.51247 -33.33610 -30.33185 -29.24818 -26.38118 -25.15878 -24.58894 -22.34513 -19.76949 -18.48359 -16.60947 -15.86490 -15.77941 -15.72700 -14.41709 -14.11006 -13.18667 -12.83583 -12.62984 -12.40507 -11.87762 -11.38175 -11.21314 -10.95285 -10.79668 -10.61744 -10.38030 -10.23429 -10.04678 -9.53186 -9.25684 -9.00973 -8.44523 -7.74688 -6.01468 -4.06322 3.32374 3.36461 3.39523 4.08777 4.38871 4.41520 4.76413 4.80617 5.26741 5.30665 5.36277 5.53701 5.88810 5.88921 6.06063 6.10534 6.18759 6.30454 6.48672 6.58856 6.66075 6.78649 7.02576 7.33385 7.40336 7.80715 8.01885 8.25139 8.47686 8.99015 9.58435 11.05511 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060050 B = 0.009312 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.169760 B = 3006.230605 C = 3238.561615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.182 3.818 3 H 0.008 0.992 4 C -0.500 4.500 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.465 5.465 13 C 0.011 3.989 14 C 0.047 3.953 15 C -0.153 4.153 16 C 0.029 3.971 17 O -0.364 6.364 18 C 0.021 3.979 19 H 0.087 0.913 20 H 0.034 0.966 21 H 0.008 0.992 22 H 0.261 0.739 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.014 -2.691 9.982 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.075 3.925 3 H 0.025 0.975 4 C -0.539 4.539 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.190 5.190 13 C -0.118 4.118 14 C 0.007 3.993 15 C -0.191 4.191 16 C -0.048 4.048 17 O -0.282 6.282 18 C -0.108 4.108 19 H 0.106 0.894 20 H 0.053 0.947 21 H 0.027 0.973 22 H 0.071 0.929 23 H 0.102 0.898 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.721 -2.950 9.748 10.843 hybrid contribution 0.435 0.403 -0.913 1.089 sum 4.156 -2.547 8.835 10.091 Atomic orbital electron populations 1.21818 0.97542 0.99758 1.00167 1.19784 0.92873 0.92483 0.87352 0.97485 1.20994 1.31030 1.12317 0.89567 0.92078 1.24948 0.95221 0.95088 0.99072 1.69875 1.36930 1.23011 1.23580 0.86549 0.79084 0.79732 0.81964 1.20209 1.21331 1.20328 1.68611 1.01881 1.46511 1.01960 1.23925 0.94563 0.99266 0.94011 1.24144 0.96393 0.87772 0.91027 1.23906 0.98521 0.98366 0.98283 1.23496 0.94903 0.86373 1.00027 1.89776 1.54514 1.30336 1.53574 1.23967 0.95152 1.00906 0.90813 0.89442 0.94658 0.97314 0.92884 0.89784 0.91313 0.88510 0.89717 0.90490 0.90111 0.90797 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.87 37.16 0.33 -3.03 16 2 C 0.18 4.70 1.71 -68.87 -0.12 4.58 16 3 H 0.01 0.21 7.63 -51.93 -0.40 -0.18 16 4 C -0.50 -14.00 8.60 -34.44 -0.30 -14.30 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.19 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.46 -10.30 5.97 -236.68 -1.41 -11.71 16 13 C 0.01 0.22 6.60 -3.05 -0.02 0.20 16 14 C 0.05 0.81 1.73 -105.17 -0.18 0.63 16 15 C -0.15 -2.07 8.41 -26.66 -0.22 -2.29 16 16 C 0.03 0.37 8.73 22.93 0.20 0.57 16 17 O -0.36 -6.31 12.75 -35.23 -0.45 -6.76 16 18 C 0.02 0.41 7.63 -3.05 -0.02 0.39 16 19 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 20 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.01 0.18 7.01 -51.93 -0.36 -0.18 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 24 H 0.07 1.38 7.65 -51.93 -0.40 0.98 16 25 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.56 7.62 -51.93 -0.40 1.16 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 247.58 15.07 3.73 3.73 Total: -1.00 -29.67 247.58 -7.32 -36.99 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.37 Total: -1.88 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.43 Total: -11.72 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.79 Total: -36.90 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.45 Total: -6.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.67 -7.32 -36.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538785.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.242 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds