Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46784 * 2 1 4 4 C 1.50693 * 109.47307 * 239.99787 * 2 1 3 5 5 H 1.07998 * 120.00085 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99793 * 59.99639 * 4 2 1 7 7 N 1.31513 * 120.00335 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00008 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.46840 * 60.00104 * 8 6 4 10 10 H 1.48498 * 109.47442 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47321 * 300.00713 * 8 6 4 12 12 N 1.46899 * 109.47071 * 119.99423 * 2 1 3 13 13 C 1.48103 * 111.00395 * 300.00404 * 12 2 1 14 14 C 1.53217 * 85.93079 * 222.90650 * 13 12 2 15 15 C 1.52618 * 120.92608 * 258.57688 * 14 13 12 16 16 C 1.53505 * 81.00155 * 207.53590 * 15 14 13 17 17 O 1.42505 * 121.07027 * 148.26418 * 14 13 12 18 18 C 1.48110 * 110.99865 * 200.45187 * 12 2 1 19 19 H 1.08998 * 109.47516 * 60.00401 * 1 2 3 20 20 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47109 * 299.99742 * 1 2 3 22 22 H 0.96995 * 120.00310 * 180.02562 * 7 6 4 23 23 H 1.08994 * 113.80010 * 108.65189 * 13 12 2 24 24 H 1.09005 * 113.90351 * 337.17099 * 13 12 2 25 25 H 1.09000 * 114.61311 * 320.55945 * 15 14 13 26 26 H 1.09005 * 114.60574 * 94.46663 * 15 14 13 27 27 H 1.08999 * 113.35385 * 270.76031 * 16 15 14 28 28 H 1.08999 * 113.35128 * 140.68186 * 16 15 14 29 29 H 1.08999 * 113.79930 * 22.84961 * 18 12 2 30 30 H 1.08998 * 113.80345 * 251.34706 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8279 -0.4194 -5.2204 11 1 3.8075 -1.1190 -4.0076 12 7 2.0197 -0.6924 1.1995 13 6 1.5448 -0.0208 2.4311 14 6 2.9667 -0.2294 2.9624 15 6 3.2804 -1.3567 3.9422 16 6 4.3820 -0.3692 4.3516 17 8 3.5581 0.7007 3.8657 18 6 3.4181 -0.3082 1.5004 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.7088 1.1612 -3.4844 23 1 0.7854 -0.5835 2.9740 24 1 1.2778 1.0264 2.2883 25 1 2.5162 -1.5244 4.7011 26 1 3.6420 -2.2742 3.4777 27 1 5.3058 -0.4939 3.7867 28 1 4.5496 -0.3309 5.4280 29 1 3.7107 0.6531 1.0781 30 1 4.1430 -1.0986 1.3060 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306538785.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = 7.278657 kcal Electronic energy + Delta-G solvation = -12872.870115 eV Core-core repulsion = 10670.003251 eV Total energy + Delta-G solvation = -2202.866864 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.40538 -39.09787 -35.36583 -32.22417 -30.52161 -28.12031 -26.88607 -26.39295 -23.69942 -21.58838 -19.84666 -18.58928 -17.56995 -17.09318 -16.96932 -16.32655 -15.74013 -14.86870 -14.50907 -14.41163 -13.80180 -13.32361 -13.26268 -12.89780 -12.72140 -12.40347 -12.32754 -12.12694 -12.04050 -11.76899 -11.15995 -10.99819 -10.58114 -10.54312 -9.58852 -8.14777 -6.27886 1.41105 1.43309 1.51212 2.39966 2.84556 3.12282 3.19998 3.26019 3.44012 4.00293 4.29995 4.39810 4.47968 4.60709 4.64423 4.71893 4.78558 4.86006 4.91126 4.93683 5.07697 5.14501 5.33594 5.35834 5.41995 5.65700 6.01396 6.21037 6.46666 6.83072 7.41157 8.91319 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060050 B = 0.009312 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.169760 B = 3006.230605 C = 3238.561615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.186 3.814 3 H -0.030 1.030 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.473 5.473 13 C 0.006 3.994 14 C 0.053 3.947 15 C -0.138 4.138 16 C 0.028 3.972 17 O -0.389 6.389 18 C 0.014 3.986 19 H 0.062 0.938 20 H 0.034 0.966 21 H 0.029 0.971 22 H 0.263 0.737 23 H 0.105 0.895 24 H 0.052 0.948 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.049 0.951 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 -4.095 11.022 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 H -0.012 1.012 4 C -0.558 4.558 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.198 5.198 13 C -0.123 4.123 14 C 0.013 3.987 15 C -0.175 4.175 16 C -0.048 4.048 17 O -0.308 6.308 18 C -0.115 4.115 19 H 0.081 0.919 20 H 0.053 0.947 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.123 0.877 24 H 0.070 0.930 25 H 0.135 0.865 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.130 0.870 29 H 0.067 0.933 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.459 -4.361 10.810 12.480 hybrid contribution 0.232 0.882 -1.174 1.487 sum 4.691 -3.479 9.636 11.267 Atomic orbital electron populations 1.21642 0.97093 0.99494 0.99946 1.19578 0.93219 0.90594 0.88746 1.01236 1.21268 1.31337 1.12389 0.90847 0.92569 1.25779 0.95297 0.95764 1.02107 1.70008 1.37692 1.24165 1.24290 0.85515 0.78725 0.78692 0.78131 1.19493 1.20794 1.19613 1.68510 1.03442 1.46255 1.01555 1.23994 0.96792 0.98400 0.93072 1.24021 0.94117 0.90171 0.90409 1.23936 0.98977 0.97592 0.96974 1.23773 0.94591 0.84347 1.02079 1.89764 1.55533 1.32055 1.53448 1.23975 0.94259 1.00083 0.93206 0.91925 0.94705 0.95241 0.92793 0.87673 0.92985 0.86526 0.88574 0.89469 0.87021 0.93274 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.26 8.87 71.98 0.64 -5.62 16 2 C 0.19 9.86 1.71 44.17 0.08 9.94 16 3 H -0.03 -1.77 7.63 -2.39 -0.02 -1.78 16 4 C -0.52 -29.51 8.60 25.60 0.22 -29.29 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 N -0.47 -20.96 5.97 -907.51 -5.42 -26.38 16 13 C 0.01 0.24 6.60 86.14 0.57 0.81 16 14 C 0.05 1.77 1.73 -20.13 -0.03 1.73 16 15 C -0.14 -3.22 8.41 30.64 0.26 -2.96 16 16 C 0.03 0.63 8.73 62.77 0.55 1.18 16 17 O -0.39 -12.80 12.75 -148.98 -1.90 -14.70 16 18 C 0.01 0.56 7.63 86.14 0.66 1.21 16 19 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 20 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.03 1.31 7.01 -2.39 -0.02 1.29 16 22 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 23 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 24 H 0.05 2.12 7.65 -2.38 -0.02 2.10 16 25 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 2.16 7.62 -2.39 -0.02 2.14 16 30 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -64.05 247.58 -0.56 -64.62 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.11 Total: 6.17 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 3.38 Total: -22.04 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -5.18 Total: -80.30 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -1.90 Total: -14.70 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -64.05 -0.56 -64.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538785.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.897 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds