Wall clock time and date at job start Mon Mar 30 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47340 * 2 1 4 4 C 1.50699 * 109.47222 * 119.99784 * 2 1 3 5 5 H 1.08000 * 119.99989 * 119.99829 * 4 2 1 6 6 C 1.37875 * 120.00001 * 300.00360 * 4 2 1 7 7 N 1.31515 * 119.99965 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00045 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47280 * 89.99891 * 8 6 4 10 10 H 1.48505 * 109.47533 * 210.00076 * 8 6 4 11 11 H 1.48503 * 109.47353 * 330.00290 * 8 6 4 12 12 N 1.46898 * 109.47544 * 239.99981 * 2 1 3 13 13 C 1.48110 * 111.00489 * 172.76747 * 12 2 1 14 14 C 1.53208 * 86.06369 * 222.96841 * 13 12 2 15 15 C 1.52626 * 120.92531 * 258.51895 * 14 13 12 16 16 C 1.53508 * 80.99807 * 207.53007 * 15 14 13 17 17 O 1.42499 * 121.07485 * 148.20202 * 14 13 12 18 18 C 1.48347 * 111.07881 * 73.29392 * 12 2 1 19 19 H 1.08999 * 109.46951 * 185.93493 * 1 2 3 20 20 H 1.08994 * 109.47259 * 305.94257 * 1 2 3 21 21 H 1.09009 * 109.46737 * 65.94285 * 1 2 3 22 22 H 0.97004 * 119.99626 * 180.02562 * 7 6 4 23 23 H 1.09000 * 113.79699 * 108.65159 * 13 12 2 24 24 H 1.09003 * 113.79593 * 337.28040 * 13 12 2 25 25 H 1.08998 * 114.61196 * 320.55399 * 15 14 13 26 26 H 1.08997 * 114.60958 * 94.50891 * 15 14 13 27 27 H 1.09001 * 113.34819 * 270.75658 * 16 15 14 28 28 H 1.09000 * 113.34934 * 140.68106 * 16 15 14 29 29 H 1.08996 * 113.69604 * 22.70918 * 18 12 2 30 30 H 1.09004 * 113.98090 * 251.26254 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3213 -1.1202 4.0079 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9492 5.1121 11 1 2.4859 -2.5661 3.7120 12 7 2.0197 -0.6925 -1.1994 13 6 3.4899 -0.5633 -1.3238 14 6 3.2350 -0.3015 -2.8117 15 6 3.4513 -1.3994 -3.8496 16 6 3.7080 -0.1746 -4.7386 17 8 4.0876 0.5575 -3.5640 18 6 1.8225 0.1379 -2.4128 19 1 -0.3633 -1.0222 0.1063 20 1 -0.3633 0.6032 0.8320 21 1 -0.3633 0.4190 -0.9385 22 1 0.7094 1.1618 3.4844 23 1 4.0310 -1.4887 -1.1264 24 1 3.9029 0.2932 -0.7909 25 1 4.3270 -2.0241 -3.6738 26 1 2.5556 -1.9656 -4.1048 27 1 2.8062 0.2102 -5.2149 28 1 4.5276 -0.3162 -5.4430 29 1 1.7360 1.2042 -2.2045 30 1 1.0426 -0.2302 -3.0795 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306538787.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:12 Heat of formation + Delta-G solvation = 28.225596 kcal Electronic energy + Delta-G solvation = -12876.187755 eV Core-core repulsion = 10674.229219 eV Total energy + Delta-G solvation = -2201.958536 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.04411 -37.46954 -33.32622 -30.33321 -29.28029 -26.15023 -25.42361 -24.54376 -22.22537 -19.86379 -18.47190 -16.60845 -15.89194 -15.82878 -15.51585 -14.40510 -14.21617 -13.17744 -12.91557 -12.44394 -12.35811 -11.75912 -11.58731 -11.13621 -10.97097 -10.79338 -10.63942 -10.46000 -10.18639 -10.08601 -9.49127 -9.25641 -8.90938 -8.49236 -7.75228 -6.02811 -4.07499 3.30294 3.36668 3.41004 4.09572 4.39090 4.40618 4.77321 4.83259 5.27018 5.28002 5.36295 5.54135 5.87837 5.89428 6.04715 6.14828 6.18694 6.35982 6.50735 6.61147 6.67959 6.84073 7.03812 7.33862 7.42555 7.79983 8.02227 8.23773 8.45343 8.97884 9.57502 11.04613 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.061627 B = 0.009333 C = 0.008688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.234918 B = 2999.356738 C = 3222.222850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.182 3.818 3 H 0.007 0.993 4 C -0.505 4.505 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.467 5.467 13 C 0.032 3.968 14 C 0.046 3.954 15 C -0.153 4.153 16 C 0.028 3.972 17 O -0.363 6.363 18 C 0.003 3.997 19 H 0.035 0.965 20 H 0.082 0.918 21 H 0.006 0.994 22 H 0.261 0.739 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -2.398 -10.558 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.075 3.925 3 H 0.024 0.976 4 C -0.544 4.544 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.192 5.192 13 C -0.097 4.097 14 C 0.006 3.994 15 C -0.190 4.190 16 C -0.049 4.049 17 O -0.281 6.281 18 C -0.126 4.126 19 H 0.055 0.945 20 H 0.100 0.900 21 H 0.025 0.975 22 H 0.071 0.929 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.787 -2.685 -10.282 10.986 hybrid contribution 0.476 0.407 0.947 1.136 sum 3.262 -2.278 -9.335 10.147 Atomic orbital electron populations 1.21705 0.97359 1.00502 0.98880 1.19784 0.93077 0.92483 0.87169 0.97571 1.21045 1.31208 1.12407 0.89707 0.92054 1.24938 0.95116 0.95064 0.99079 1.69906 1.36833 1.22991 1.23482 0.86500 0.78462 0.80084 0.82393 1.20744 1.21210 1.19823 1.68612 1.05653 1.41922 1.02978 1.23740 0.93333 1.01670 0.90941 1.24120 0.92225 0.88943 0.94118 1.23905 1.03260 0.97021 0.94831 1.23499 1.00166 0.90822 0.90387 1.89787 1.62387 1.56322 1.19575 1.24134 0.94567 0.98238 0.95670 0.94540 0.89967 0.97476 0.92942 0.89739 0.90786 0.88393 0.89846 0.90632 0.90100 0.91156 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.05 37.16 0.34 -2.81 16 2 C 0.18 4.69 1.65 -68.87 -0.11 4.58 16 3 H 0.01 0.19 7.70 -51.93 -0.40 -0.21 16 4 C -0.51 -14.09 8.21 -34.44 -0.28 -14.38 16 5 H 0.06 1.71 7.71 -52.49 -0.40 1.31 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -25.76 11.39 55.43 0.63 -25.12 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.47 -10.34 5.97 -235.36 -1.41 -11.74 16 13 C 0.03 0.65 7.16 -3.05 -0.02 0.63 16 14 C 0.05 0.80 1.73 -105.16 -0.18 0.62 16 15 C -0.15 -2.06 8.41 -26.66 -0.22 -2.29 16 16 C 0.03 0.36 8.73 22.93 0.20 0.56 16 17 O -0.36 -6.33 12.75 -35.23 -0.45 -6.78 16 18 C 0.00 0.06 7.05 -2.92 -0.02 0.04 16 19 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 20 H 0.08 2.22 6.25 -51.93 -0.32 1.89 16 21 H 0.01 0.14 7.50 -51.92 -0.39 -0.25 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 24 H 0.07 1.62 7.84 -51.93 -0.41 1.21 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.39 7.74 -51.93 -0.40 0.99 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 248.31 15.07 3.74 3.74 Total: -1.00 -29.66 248.31 -7.33 -36.99 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.42 Total: -2.15 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.40 Total: -11.48 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.77 Total: -36.87 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.45 Total: -6.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.66 -7.33 -36.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538787.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.215 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds